X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FNetNglyc.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FNetNglyc.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=5cd196e00b35b46fd704eaab7569a075ccce9d2d;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/_impl/NetNglyc.html b/website/full_javadoc/compbio/runner/_impl/NetNglyc.html deleted file mode 100644 index 5cd196e..0000000 --- a/website/full_javadoc/compbio/runner/_impl/NetNglyc.html +++ /dev/null @@ -1,574 +0,0 @@ - - - - - - -NetNglyc - - - - - - - - - - - - -
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Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
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- -compbio.runner._impl -
-Class NetNglyc

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-java.lang.Object
-  extended by compbio.runner._impl.NetNglyc
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All Implemented Interfaces:
Executable<NetNglyc>
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public class NetNglyc
extends Object
implements Executable<NetNglyc>
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-Nested Class Summary
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Nested classes/interfaces inherited from interface compbio.engine.client.Executable
Executable.ExecProvider
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-Constructor Summary
NetNglyc() - -
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-Method Summary
- NetNglycaddParameters(List<String> parameters) - -
-          Adds parameter to the list of parameters for a native executable
- StringgetClusterJobSettings() - -
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- StringgetCommandName() - -
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- List<String>getCreatedFiles() - -
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- StringgetError() - -
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- StringgetInput() - -
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- Limit<NetNglyc>getLimit(String presetName) - -
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- LimitsManager<NetNglyc>getLimits() - -
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- StringgetOutput() - -
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- CommandBuilder<NetNglyc>getParameters(Executable.ExecProvider provider) - -
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-<V> V
-		getResults(String directory) - -
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-static List<String>getTestArgs() - -
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-static StringgetTestCommand() - -
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- Executable<?>loadRunConfiguration(RunConfiguration rconfig) - -
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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-Constructor Detail
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-NetNglyc

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-public NetNglyc()
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-Method Detail
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-getParameters

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-public CommandBuilder<NetNglyc> getParameters(Executable.ExecProvider provider)
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Specified by:
getParameters in interface Executable<NetNglyc>
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-getTestArgs

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-public static List<String> getTestArgs()
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-addParameters

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-public NetNglyc addParameters(List<String> parameters)
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Description copied from interface: Executable
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Adds parameter to the list of parameters for a native executable -

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Specified by:
addParameters in interface Executable<NetNglyc>
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Returns:
this Executable
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-getTestCommand

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-public static String getTestCommand()
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-getCommandName

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-public String getCommandName()
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-getCreatedFiles

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-public List<String> getCreatedFiles()
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Specified by:
getCreatedFiles in interface Executable<NetNglyc>
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-getInput

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-public String getInput()
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Specified by:
getInput in interface Executable<NetNglyc>
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-getResults

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-public <V> V getResults(String directory)
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Specified by:
getResults in interface Executable<NetNglyc>
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-loadRunConfiguration

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-public Executable<?> loadRunConfiguration(RunConfiguration rconfig)
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Specified by:
loadRunConfiguration in interface Executable<NetNglyc>
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-getOutput

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-public String getOutput()
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Specified by:
getOutput in interface Executable<NetNglyc>
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-getError

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-public String getError()
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Specified by:
getError in interface Executable<NetNglyc>
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-getLimit

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-public Limit<NetNglyc> getLimit(String presetName)
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Specified by:
getLimit in interface Executable<NetNglyc>
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-getLimits

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-public LimitsManager<NetNglyc> getLimits()
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Specified by:
getLimits in interface Executable<NetNglyc>
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-getClusterJobSettings

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-public String getClusterJobSettings()
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Specified by:
getClusterJobSettings in interface Executable<NetNglyc>
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Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
-		 - -
- PREV CLASS  - NEXT CLASS - FRAMES   - NO FRAMES   -  - - - -
- SUMMARY: NESTED | FIELD | CONSTR | METHOD -DETAIL: FIELD | CONSTR | METHOD
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