-PSIBlast -

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FPSIBlast.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FPSIBlast.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=3f9faab9ff73c49ddb74858af923c5a1d3041b77;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/_impl/PSIBlast.html b/website/full_javadoc/compbio/runner/_impl/PSIBlast.html deleted file mode 100644 index 3f9faab..0000000 --- a/website/full_javadoc/compbio/runner/_impl/PSIBlast.html +++ /dev/null @@ -1,360 +0,0 @@ - - - - - - -PSIBlast - - - - - - - - - - - - -

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- -compbio.runner._impl -
-Class PSIBlast

-java.lang.Object
-  compbio.runner._SkeletalCommandBuilder
-      compbio.runner._impl.PSIBlast
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All Implemented Interfaces:: Executable<_SkeletalCommandBuilder>

public class PSIBlast
extends _SkeletalCommandBuilder
extends _SkeletalCommandBuilder

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-Nested Class Summary
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Nested classes/interfaces inherited from interface compbio.engine.client.Executable
Executable.ExecProvider
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-Constructor Summary
PSIBlast(String workDirectory) - -
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-Method Summary
- String getCommand(Executable.ExecProvider provider) - -
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- String getCommandName() - -
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- List<String> getCreatedFiles() - -
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- String getInput() - -
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- boolean removeOutput(String outfile) - -
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Methods inherited from class compbio.runner._SkeletalCommandBuilder
addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName
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Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Nested classes/interfaces inherited from interface compbio.engine.client.Executable
`Executable.ExecProvider`

-Constructor Summary
`PSIBlast(String workDirectory)` - - -

-Method Summary
- `String`	`getCommand(Executable.ExecProvider provider)` - - -
- `String`	`getCommandName()` - - -
- `List<String>`	`getCreatedFiles()` - - -
- `String`	`getInput()` - - -
- `boolean`	`removeOutput(String outfile)` - - -

Methods inherited from class compbio.runner._SkeletalCommandBuilder
`addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

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-Constructor Detail
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-PSIBlast

-public PSIBlast(String workDirectory)

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-Method Detail

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-removeOutput

-public boolean removeOutput(String outfile)

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-getCommand

-public String getCommand(Executable.ExecProvider provider)

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-getCommandName

-public String getCommandName()

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-getCreatedFiles

-public List<String> getCreatedFiles()

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-getInput

-public String getInput()

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Overview

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Class

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Deprecated

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- PREV CLASS - NEXT CLASS

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-DETAIL: FIELD | CONSTR | METHOD

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- -compbio.runner._impl - -Class PSIBlast

-PSIBlast

-removeOutput

-getCommand

-getCommandName

-getCreatedFiles

-getInput

- -compbio.runner._impl -
-Class PSIBlast