X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FRPSBlast.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FRPSBlast.html;h=35a934e642107a81d416000958f12f8ca4e960cf;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/_impl/RPSBlast.html b/website/full_javadoc/compbio/runner/_impl/RPSBlast.html new file mode 100644 index 0000000..35a934e --- /dev/null +++ b/website/full_javadoc/compbio/runner/_impl/RPSBlast.html @@ -0,0 +1,360 @@ + + + + + + +RPSBlast + + + + + + + + + + + + +
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+ +

+ +compbio.runner._impl +
+Class RPSBlast

+
+java.lang.Object
+  extended by compbio.runner._SkeletalCommandBuilder
+      extended by compbio.runner._impl.RPSBlast
+
+
+
All Implemented Interfaces:
Executable<_SkeletalCommandBuilder>
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+
+
+
public class RPSBlast
extends _SkeletalCommandBuilder
+ + +

+


+ +

+ + + + + + + +
+Nested Class Summary
+ + + + + + + +
Nested classes/interfaces inherited from interface compbio.engine.client.Executable
Executable.ExecProvider
+  + + + + + + + + + + + +
+Constructor Summary
RPSBlast(String workDirectory) + +
+           
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+Method Summary
+ StringgetCommand(Executable.ExecProvider provider) + +
+           
+static StringgetCommandName() + +
+           
+ List<String>getCreatedFiles() + +
+           
+ StringgetInput() + +
+           
+static StringgetTestCommand() + +
+           
+ + + + + + + +
Methods inherited from class compbio.runner._SkeletalCommandBuilder
addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName
+ + + + + + + +
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
+  +

+ + + + + + + + +
+Constructor Detail
+ +

+RPSBlast

+
+public RPSBlast(String workDirectory)
+
+
+ + + + + + + + +
+Method Detail
+ +

+getCommand

+
+public String getCommand(Executable.ExecProvider provider)
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+
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+ +

+getTestCommand

+
+public static String getTestCommand()
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+getCommandName

+
+public static String getCommandName()
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+ +

+getCreatedFiles

+
+public List<String> getCreatedFiles()
+
+
+
+
+
+
+ +

+getInput

+
+public String getInput()
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+
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