-Uses of Class compbio.runner._SkeletalCommandBuilder -

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-Uses of Class
compbio.runner._SkeletalCommandBuilder

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-Packages that use _SkeletalCommandBuilder
compbio.runner	Utilities commonly used by all runners.
compbio.runner._impl

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-Uses of _SkeletalCommandBuilder in compbio.runner
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Methods in compbio.runner that return _SkeletalCommandBuilder
- _SkeletalCommandBuilder _SkeletalCommandBuilder.addParameter(String parameter) - -
-          Deprecated.
- _SkeletalCommandBuilder _SkeletalCommandBuilder.addParameters(List<String> parameters) - -
-          Deprecated.
- _SkeletalCommandBuilder _SkeletalCommandBuilder.addParameters(String[] parameters) - -
-          Deprecated.
- _SkeletalCommandBuilder _SkeletalCommandBuilder.setEmail(String email) - -
-          Deprecated.
- _SkeletalCommandBuilder _SkeletalCommandBuilder.setName(String name) - -
-          Deprecated.
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Methods in compbio.runner that return types with arguments of type _SkeletalCommandBuilder
- Limit<_SkeletalCommandBuilder> _SkeletalCommandBuilder.getLimit(String presetName) - -
-          Deprecated.
- LimitsManager<_SkeletalCommandBuilder> _SkeletalCommandBuilder.getLimits() - -
-          Deprecated.
- CommandBuilder<_SkeletalCommandBuilder> _SkeletalCommandBuilder.getParameters(Executable.ExecProvider provider) - -
-          Deprecated.
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-Uses of _SkeletalCommandBuilder in compbio.runner._impl
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Subclasses of _SkeletalCommandBuilder in compbio.runner._impl
- class BlastAll - -
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- class Mcl - -
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- class OB - -
-          TODO this needs fixing! Executable does not work
- class PSIBlast - -
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- class Ronn - -
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- class RPSBlast - -
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