+compbio.runner.disorder +

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fdisorder%2Fpackage-summary.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fdisorder%2Fpackage-summary.html;h=de5cf649d8508807dfc16351d359ddfe47809272;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/disorder/package-summary.html b/website/full_javadoc/compbio/runner/disorder/package-summary.html new file mode 100644 index 0000000..de5cf64 --- /dev/null +++ b/website/full_javadoc/compbio/runner/disorder/package-summary.html @@ -0,0 +1,186 @@ + + + + + + +compbio.runner.disorder + + + + + + + + + + + + +

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+Package compbio.runner.disorder +

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+Class Summary
Disembl	DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot	./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.
IUPred	iupred sequenceFile + + Maximum sequence length is 40000 chars.
Jronn	Command line + + java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out

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