-Uses of Package compbio.runner.disorder -

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fdisorder%2Fpackage-use.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fdisorder%2Fpackage-use.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=b5c3017776d02f4ec63ca44d9c409c8b3baa6cd2;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/disorder/package-use.html b/website/full_javadoc/compbio/runner/disorder/package-use.html deleted file mode 100644 index b5c3017..0000000 --- a/website/full_javadoc/compbio/runner/disorder/package-use.html +++ /dev/null @@ -1,251 +0,0 @@ - - - - - - -Uses of Package compbio.runner.disorder - - - - - - - - - - - - -

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-Uses of Package
compbio.runner.disorder

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-Packages that use compbio.runner.disorder
compbio.runner.disorder
compbio.ws.server

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-Classes in compbio.runner.disorder used by compbio.runner.disorder
Disembl - -
-          DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops - fold_rem465 sequence_file print - - 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' - - This version of DisEMBL is 1.4 (latest available for download in Feb 2011) - capable of outputting raw values - - The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot - -
-          ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame - - FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' - Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' - - Hard-coded values are 10 15 74 4 5.
IUPred - -
-          iupred sequenceFile - - Maximum sequence length is 40000 chars.
Jronn - -
-          Command line - - java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out
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-Classes in compbio.runner.disorder used by compbio.runner.disorder
Disembl - - - DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops - fold_rem465 sequence_file print - - 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' - - This version of DisEMBL is 1.4 (latest available for download in Feb 2011) - capable of outputting raw values - - The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot - - - ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame - - FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' - Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' - - Hard-coded values are 10 15 74 4 5.
IUPred - - - iupred sequenceFile - - Maximum sequence length is 40000 chars.
Jronn - - - Command line - - java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out

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-Classes in compbio.runner.disorder used by compbio.ws.server
Disembl - -
-          DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops - fold_rem465 sequence_file print - - 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' - - This version of DisEMBL is 1.4 (latest available for download in Feb 2011) - capable of outputting raw values - - The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot - -
-          ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame - - FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' - Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' - - Hard-coded values are 10 15 74 4 5.
IUPred - -
-          iupred sequenceFile - - Maximum sequence length is 40000 chars.
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-Classes in compbio.runner.disorder used by compbio.ws.server
Disembl - - - DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops - fold_rem465 sequence_file print - - 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' - - This version of DisEMBL is 1.4 (latest available for download in Feb 2011) - capable of outputting raw values - - The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot - - - ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame - - FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' - Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' - - Hard-coded values are 10 15 74 4 5.
IUPred - - - iupred sequenceFile - - Maximum sequence length is 40000 chars.