+Uses of Package compbio.runner.disorder +

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+Uses of Package
compbio.runner.disorder

+ + + + + + + + + + + + + + +

+Packages that use compbio.runner.disorder
compbio.runner.disorder
compbio.ws.server

+ +

+ + + + + + + + + + + + + + + + + +
+Classes in compbio.runner.disorder used by compbio.runner.disorder
Disembl + +
+          DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot + +
+          ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.
IUPred + +
+          iupred sequenceFile + + Maximum sequence length is 40000 chars.
Jronn + +
+          Command line + + java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out
+ +

+Classes in compbio.runner.disorder used by compbio.runner.disorder
Disembl + + + DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot + + + ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.
IUPred + + + iupred sequenceFile + + Maximum sequence length is 40000 chars.
Jronn + + + Command line + + java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out

+ + + + + + + + + + + + + + +
+Classes in compbio.runner.disorder used by compbio.ws.server
Disembl + +
+          DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot + +
+          ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.
IUPred + +
+          iupred sequenceFile + + Maximum sequence length is 40000 chars.
+ +

+Classes in compbio.runner.disorder used by compbio.ws.server
Disembl + + + DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops + fold_rem465 sequence_file print + + 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' + + This version of DisEMBL is 1.4 (latest available for download in Feb 2011) + capable of outputting raw values + + The values of the parameters are hard coded in DisEMBL.py script.
GlobPlot + + + ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame + + FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' + Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' + + Hard-coded values are 10 15 74 4 5.
IUPred + + + iupred sequenceFile + + Maximum sequence length is 40000 chars.