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+ClustalW
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+compbio.runner.msa
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+Class ClustalW
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+java.lang.Object
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compbio.engine.client.SkeletalExecutable<ClustalW>
+ compbio.runner.msa.ClustalW
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+- All Implemented Interfaces:
- Executable<ClustalW>
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+public class ClustalW
- extends SkeletalExecutable<ClustalW>
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+Nested Class Summary |
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+Constructor Summary |
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+ClustalW()
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+ |
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+| Methods inherited from class compbio.engine.client.SkeletalExecutable |
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+addParameters, equals, getClusterCpuNum, getClusterJobSettings, getError, getInput, getLimit, getLimits, getOutput, getParameters, hashCode, loadRunConfiguration, setError, setParameter, toString |
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+KEY_VALUE_SEPARATOR
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+public static final String KEY_VALUE_SEPARATOR
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+- See Also:
- Constant Field Values
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+Constructor Detail |
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+ClustalW
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+public ClustalW()
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+setOutput
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+public ClustalW setOutput(String outFile)
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+- Overrides:
setOutput in class SkeletalExecutable<ClustalW>
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+setInput
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+public ClustalW setInput(String inFile)
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+- Overrides:
setInput in class SkeletalExecutable<ClustalW>
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+getResults
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+public Alignment getResults(String workDirectory)
+ throws ResultNotAvailableException
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+- Throws:
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ResultNotAvailableException
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+getCreatedFiles
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+public List<String> getCreatedFiles()
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+- Description copied from class:
SkeletalExecutable
+- This method cannot really tell whether the files has actually been
+ created or not. It must be overridden as required.
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+- Specified by:
getCreatedFiles in interface Executable<ClustalW>- Overrides:
getCreatedFiles in class SkeletalExecutable<ClustalW>
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+- See Also:
Executable.getCreatedFiles()
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+getStatFile
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+public static String getStatFile()
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+getType
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+public Class<ClustalW> getType()
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+- Specified by:
getType in class SkeletalExecutable<ClustalW>
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+- Returns:
- subclasses must return their type
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