X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fmsa%2FProbcons.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fmsa%2FProbcons.html;h=2b1fb99c7915a0dacd1922cf229fbefa3c8f61e5;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git
diff --git a/website/full_javadoc/compbio/runner/msa/Probcons.html b/website/full_javadoc/compbio/runner/msa/Probcons.html
new file mode 100644
index 0000000..2b1fb99
--- /dev/null
+++ b/website/full_javadoc/compbio/runner/msa/Probcons.html
@@ -0,0 +1,416 @@
+
+
+
+
+
+
+Probcons
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+compbio.runner.msa
+
+Class Probcons
+
+java.lang.Object
+ compbio.engine.client.SkeletalExecutable<Probcons>
+ compbio.runner.msa.Probcons
+
+
+- All Implemented Interfaces:
- Executable<Probcons>, PipedExecutable<Probcons>
+
+
+
+public class Probcons
- extends SkeletalExecutable<Probcons>
- implements PipedExecutable<Probcons>
+
+
+
+
+
+
+
+
+
+
+
+
+Nested Class Summary |
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+Constructor Summary |
+
+
+Probcons()
+
+
+ |
+
+
+
+
+
+
+
+
+
+
+Methods inherited from class compbio.engine.client.SkeletalExecutable |
+
+
+addParameters, equals, getClusterCpuNum, getClusterJobSettings, getError, getInput, getLimit, getLimits, getOutput, getParameters, hashCode, loadRunConfiguration, setError, setOutput, setParameter, toString |
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+KEY_VALUE_SEPARATOR
+
+public static final String KEY_VALUE_SEPARATOR
+
+
+- See Also:
- Constant Field Values
+
+
+
+
+
+
+
+
+Constructor Detail |
+
+
+
+
+Probcons
+
+public Probcons()
+
+
+
+
+
+
+
+
+
+getResults
+
+public Alignment getResults(String workDirectory)
+ throws ResultNotAvailableException
+
+
+- Specified by:
getResults
in interface Executable<Probcons>
+
+
+
+- Throws:
+
ResultNotAvailableException
+
+
+
+
+
+getCreatedFiles
+
+public List<String> getCreatedFiles()
+
+- Description copied from class:
SkeletalExecutable
+- This method cannot really tell whether the files has actually been
+ created or not. It must be overridden as required.
+
+
+- Specified by:
getCreatedFiles
in interface Executable<Probcons>
- Overrides:
getCreatedFiles
in class SkeletalExecutable<Probcons>
+
+
+- See Also:
Executable.getCreatedFiles()
+
+
+
+
+
+setInput
+
+public Probcons setInput(String inFile)
+
+
+- Overrides:
setInput
in class SkeletalExecutable<Probcons>
+
+
+
+
+
+
+
+
+getType
+
+public Class<Probcons> getType()
+
+
+- Specified by:
getType
in class SkeletalExecutable<Probcons>
+
+
+
+- Returns:
- subclasses must return their type
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+