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-Uses of Class
compbio.runner.msa.ClustalO

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-Packages that use ClustalO
compbio.runner.msaWrappers for native executables for multiple sequence alignment (msa) 
compbio.ws.server  
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-Uses of ClustalO in compbio.runner.msa
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Methods in compbio.runner.msa that return ClustalO
- ClustalOClustalO.setInput(String inFile) - -
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- ClustalOClustalO.setOutput(String outFile) - -
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Methods in compbio.runner.msa that return types with arguments of type ClustalO
- CommandBuilder<ClustalO>ClustalO.getParameters(Executable.ExecProvider provider) - -
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- Class<ClustalO>ClustalO.getType() - -
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-Uses of ClustalO in compbio.ws.server
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Methods in compbio.ws.server that return types with arguments of type ClustalO
- Limit<ClustalO>ClustalOWS.getLimit(String presetName) - -
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- LimitsManager<ClustalO>ClustalOWS.getLimits() - -
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- PresetManager<ClustalO>ClustalOWS.getPresets() - -
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- RunnerConfig<ClustalO>ClustalOWS.getRunnerOptions() - -
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Method parameters in compbio.ws.server with type arguments of type ClustalO
- StringClustalOWS.customAlign(List<FastaSequence> sequences, - List<Option<ClustalO>> options) - -
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- StringClustalOWS.presetAlign(List<FastaSequence> sequences, - Preset<ClustalO> preset) - -
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