X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fmsa%2Fclass-use%2FMafft.html;h=75977c5dbe3e6506e382c1693336cabde99287a5;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=65e65124981793d0c2a677f42e1f48c72a8cc72e;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git
diff --git a/website/full_javadoc/compbio/runner/msa/class-use/Mafft.html b/website/full_javadoc/compbio/runner/msa/class-use/Mafft.html
index 65e6512..75977c5 100644
--- a/website/full_javadoc/compbio/runner/msa/class-use/Mafft.html
+++ b/website/full_javadoc/compbio/runner/msa/class-use/Mafft.html
@@ -2,12 +2,12 @@
-
+
Uses of Class compbio.runner.msa.Mafft
-
+
@@ -117,7 +117,7 @@ Uses of
Mafft |
-Mafft.addParameters(java.util.List<java.lang.String> parameters)
+ | Mafft.addParameters(List<String> parameters)
Mafft input must always be the last parameter! |
@@ -125,7 +125,7 @@ Uses of
Mafft |
-Mafft.setInput(java.lang.String inFile)
+ | Mafft.setInput(String inFile)
|
@@ -140,16 +140,8 @@ Uses of
- Limit<Mafft> |
-Mafft.getLimit(java.lang.String presetName)
-
-
- |
-
-
-
- LimitsManager<Mafft> |
-Mafft.getLimits()
+ Class<Mafft> |
+Mafft.getType()
|
@@ -174,7 +166,7 @@ Uses of
Limit<Mafft> |
-MafftWS.getLimit(java.lang.String presetName)
+ | MafftWS.getLimit(String presetName)
|
@@ -213,17 +205,17 @@ Uses of
- java.lang.String |
-MafftWS.customAlign(java.util.List<FastaSequence> sequences,
- java.util.List<Option<Mafft>> options)
+ String |
+MafftWS.customAlign(List<FastaSequence> sequences,
+ List<Option<Mafft>> options)
|
- java.lang.String |
-MafftWS.presetAlign(java.util.List<FastaSequence> sequences,
+ String |
+MafftWS.presetAlign(List<FastaSequence> sequences,
Preset<Mafft> preset)
|