X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fmsa%2Fclass-use%2FProbcons.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fmsa%2Fclass-use%2FProbcons.html;h=1831e678bd45f036221570e780d6df2478b7214f;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/msa/class-use/Probcons.html b/website/full_javadoc/compbio/runner/msa/class-use/Probcons.html new file mode 100644 index 0000000..1831e67 --- /dev/null +++ b/website/full_javadoc/compbio/runner/msa/class-use/Probcons.html @@ -0,0 +1,275 @@ + + + + + + +Uses of Class compbio.runner.msa.Probcons + + + + + + + + + + + + +
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+Uses of Class
compbio.runner.msa.Probcons

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+Packages that use Probcons
compbio.runner.msaWrappers for native executables for multiple sequence alignment (msa) 
compbio.ws.server  
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+Uses of Probcons in compbio.runner.msa
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Methods in compbio.runner.msa that return Probcons
+ ProbconsProbcons.setInput(String inFile) + +
+           
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Methods in compbio.runner.msa that return types with arguments of type Probcons
+ Class<Probcons>Probcons.getType() + +
+           
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+Uses of Probcons in compbio.ws.server
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Methods in compbio.ws.server that return types with arguments of type Probcons
+ Limit<Probcons>ProbconsWS.getLimit(String presetName) + +
+           
+ LimitsManager<Probcons>ProbconsWS.getLimits() + +
+           
+ PresetManager<Probcons>ProbconsWS.getPresets() + +
+           
+ RunnerConfig<Probcons>ProbconsWS.getRunnerOptions() + +
+           
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Method parameters in compbio.ws.server with type arguments of type Probcons
+ StringProbconsWS.customAlign(List<FastaSequence> sequences, + List<Option<Probcons>> options) + +
+           
+ StringProbconsWS.presetAlign(List<FastaSequence> sequences, + Preset<Probcons> preset) + +
+           
+  +

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