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+ + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
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+ + + +
+ +

+ +compbio.ws.server +
+Class SequenceAnnotationService<T>

+
+java.lang.Object
+  extended by compbio.ws.server.GenericMetadataService
+      extended by compbio.ws.server.SequenceAnnotationService<T>
+
+
+
Type Parameters:
T -
+
+
Direct Known Subclasses:
AAConWS, DisemblWS, GlobPlotWS, IUPredWS, JronnWS
+
+
+
+
public abstract class SequenceAnnotationService<T>
extends GenericMetadataService
+ + +

+Common methods for all SequenceAnnotation web services +

+ +

+

+
Since:
+
2.0
+
Version:
+
1.0 June 2011
+
Author:
+
pvtroshin
+
+
+ +

+ + + + + + + + + + + + + + + + + + + + + + + + +
+Method Summary
+ Stringanalize(List<FastaSequence> sequences) + +
+           
+ StringcustomAnalize(List<FastaSequence> sequences, + List<Option<T>> options) + +
+           
+ ScoreManagergetAnnotation(String jobId) + +
+           
+ StringpresetAnalize(List<FastaSequence> sequences, + Preset<T> preset) + +
+           
+  + + + + + + + +
Methods inherited from class compbio.ws.server.GenericMetadataService
cancelJob, getJobStatus, getLimit, getLimits, getPresets, getRunnerOptions, pullExecStatistics
+  + + + + + + + +
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
+  +

+ + + + + + + + +
+Method Detail
+ +

+getAnnotation

+
+public ScoreManager getAnnotation(String jobId)
+                           throws ResultNotAvailableException
+
+
+ +
Throws: +
ResultNotAvailableException
+
+
+
+ +

+analize

+
+public String analize(List<FastaSequence> sequences)
+               throws UnsupportedRuntimeException,
+                      LimitExceededException,
+                      JobSubmissionException
+
+
+ +
Throws: +
UnsupportedRuntimeException +
LimitExceededException +
JobSubmissionException
+
+
+
+ +

+customAnalize

+
+public String customAnalize(List<FastaSequence> sequences,
+                            List<Option<T>> options)
+                     throws UnsupportedRuntimeException,
+                            LimitExceededException,
+                            JobSubmissionException,
+                            WrongParameterException
+
+
+ +
Throws: +
UnsupportedRuntimeException +
LimitExceededException +
JobSubmissionException +
WrongParameterException
+
+
+
+ +

+presetAnalize

+
+public String presetAnalize(List<FastaSequence> sequences,
+                            Preset<T> preset)
+                     throws UnsupportedRuntimeException,
+                            LimitExceededException,
+                            JobSubmissionException,
+                            WrongParameterException
+
+
+ +
Throws: +
UnsupportedRuntimeException +
LimitExceededException +
JobSubmissionException +
WrongParameterException
+
+
+ +
+ + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + +
Overview  Package   Class  Use  Tree  Deprecated  Index  Help 
+		 + +
+ PREV CLASS  + NEXT CLASS + FRAMES   + NO FRAMES   +  + + + +
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+ + + +
+ + +