X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Findex-files%2Findex-10.html;fp=website%2Ffull_javadoc%2Findex-files%2Findex-10.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=f172cbe2eb6a182b2de11e5f63787431e1ab374d;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/index-files/index-10.html b/website/full_javadoc/index-files/index-10.html deleted file mode 100644 index f172cbe..0000000 --- a/website/full_javadoc/index-files/index-10.html +++ /dev/null @@ -1,232 +0,0 @@ - - - - - - -J-Index - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - -
Overview  Package  Class  Use  Tree  Deprecated   Index  Help 
-		 - -
- PREV LETTER  - NEXT LETTER - FRAMES   - NO FRAMES   -  - - - -
- - - -A B C D E F G H I J K L M N O P R S T U V W _
-

-J

-
-
JABAService - Interface in compbio.data.msa
This is a marker interface, contains no methods
JackHmmerHitParser - Class in compbio.pipeline._jpred
Parser for the following files:
JackHmmerHitParser(String) - -Constructor for class compbio.pipeline._jpred.JackHmmerHitParser -
  -
JManagement - Interface in compbio.data.msa
 
JnetAnnotation - Enum in compbio.data._structure
 
Job - Class in compbio.engine
 
Job(String, String, ConfiguredExecutable<?>) - -Constructor for class compbio.engine.Job -
  -
JobExecutionException - Exception in compbio.metadata
JobExecutionException is thrown wherever the results of the calculation - cannot be obtained.
JobExecutionException(String) - -Constructor for exception compbio.metadata.JobExecutionException -
  -
JobExecutionException(Throwable) - -Constructor for exception compbio.metadata.JobExecutionException -
  -
JobExecutionException(String, Throwable) - -Constructor for exception compbio.metadata.JobExecutionException -
  -
JOBID - -Static variable in class compbio.engine.cluster.drmaa.ClusterSession -
  -
Joblist - Class in compbio.stat.servlet
 
Joblist() - -Constructor for class compbio.stat.servlet.Joblist -
  -
JobRunner - Class in compbio.engine.cluster.drmaa
Single cluster job runner class
JobRunner(ConfiguredExecutable<?>) - -Constructor for class compbio.engine.cluster.drmaa.JobRunner -
  -
JobStat - Class in compbio.stat.collector
 
JobStatus - Enum in compbio.metadata
The status of the job.
JobSubmissionException - Exception in compbio.metadata
Exception for generic problems with JobSubmission it is often thrown as a - wrapper for the lower level exceptions like IOException or DrmaaException.
JobSubmissionException(String) - -Constructor for exception compbio.metadata.JobSubmissionException -
  -
JobSubmissionException(Throwable) - -Constructor for exception compbio.metadata.JobSubmissionException -
  -
JobSubmissionException(String, Throwable) - -Constructor for exception compbio.metadata.JobSubmissionException -
  -
JobSubmissionExceptionBean - Class in compbio.data.msa.jaxws
This class was generated by the JAX-WS RI.
JobSubmissionExceptionBean() - -Constructor for class compbio.data.msa.jaxws.JobSubmissionExceptionBean -
  -
Jpred4 - Class in compbio.pipeline._jpred
jpred --sequence OR --alignment [--db - ] [--pred-nohits] [--logLevel=(ERROR|INFO|DEBUG)] [--help] - - jpred4 --sequence The path to the sequence (in FASTA format) you - want to predict OR - - [--alignment ] The alignment which to use for prediction - - [--profile=] - - [--db ] Database to use for PSI-BLAST querying.
Jpred4() - -Constructor for class compbio.pipeline._jpred.Jpred4 -
  -
JpredAnnotation - Enum in compbio.data._structure
 
JpredResult - Class in compbio.data._structure
Jnet result - - jnetpred:-,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,-, - -,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H - ,H,H,-,-,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,-,-,-,-,H,H,H,H, - -,-,-,-,-,-,-,-,-,-,-,-,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,- - , JNETCONF:7,3,7,9,9,9,9,9,9,9,7,5,2,6,6,3,6,7,5,1,0,5,3,3,6,4,6,6,7,7,7,7,7, - 7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,6,3,6,8,9,9,9,9,9,9,9 - 7,3,7,7,6,2,4,4,1,5,7,8,7,7,7,7,7,7,7,6,5,3,5,6,6,6,4,0,0,2,1,3,5,7,7,7,7,7,7 - , JNETSOL25:B,B,-,-,-,B,-,B,-,B,B,B,-,-,-,B,-,B,-,-,-,-,-,B,-,B,-,-,-,-,-,-, - -,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,B,-,B,- - , B,B,B,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,B,-,-,-,-,B,-,-,B,B,-,- - ,B, - JNETSOL5:-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,B,B,B,B,-,-,-,B,-,-,-,-,-,-,-,-,- - ,-,- - JNETSOL0:-,-,-,-,-,-,B,-,-,B,-,B,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-, - -,-,- ,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,-,B,-,-, - JNETHMM:-,H,H,H,H,H,H,H,H,H,H, - H,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,-,-, - -,-,-,-,-,-,-,-,-,-,-,-,-,-,- - ,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H, - JNETPROPH:0.0110,0.1125,0.8552,0.0107 - ,0.6245,0.3614,0.0120,0.8702,0.1238,0.0120 - ,0.0193,0.9284,0.0708,0.0278,0.8703,0.1244 - ,0.1591,0.7399,0.1456,0.2488,0.5824,0.1017, - JNETPROPE:0.0107,0.6245,0.3614,0.0120 - ,0.8702,0.1238,0.0120,0.9335,0.0656,0.0102 - ,0.9586,0.0465,0.0094,0.9662,0.0433, - ,0.1525,0.7103,0.1088,0.1181,0.7425,0.1784,
JpredResult() - -Constructor for class compbio.data._structure.JpredResult -
  -
Jronn - Class in compbio.runner.disorder
Command line - - java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out
Jronn() - -Constructor for class compbio.runner.disorder.Jronn -
  -
JronnWS - Class in compbio.ws.server
 
JronnWS() - -Constructor for class compbio.ws.server.JronnWS -
  -
Jws2Client - Class in compbio.ws.client
A command line client for JAva Bioinformatics Analysis Web Services
-
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - -
Overview  Package  Class  Use  Tree  Deprecated   Index  Help 
-		 - -
- PREV LETTER  - NEXT LETTER - FRAMES   - NO FRAMES   -  - - - -
- - - -A B C D E F G H I J K L M N O P R S T U V W _
- - -