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Limit<T> - Class in compbio.metadata: A value object containing a maximum number of sequences and a maximum average - sequence length for a preset.
Limit(int, int, String) - -Constructor for class compbio.metadata.Limit -: Instantiate the limit -
Limit(int, int, String, boolean) - -Constructor for class compbio.metadata.Limit -: -
LimitExceededException - Exception in compbio.metadata: This exception is thrown if the task larger in size that the limit that - applies to the calculation.
LimitExceededException(String) - -Constructor for exception compbio.metadata.LimitExceededException -: -
LimitExceededExceptionBean - Class in compbio.data.msa.jaxws: This class was generated by the JAX-WS RI.
LimitExceededExceptionBean() - -Constructor for class compbio.data.msa.jaxws.LimitExceededExceptionBean -: -
LimitsManager<T> - Class in compbio.metadata: A collection of Limits
LimitsManager() - -Constructor for class compbio.metadata.LimitsManager -: -
load(InputStream) - -Static method in class compbio.engine.client.RunConfiguration -: -
LoadBalancer - Class in compbio.engine: This class decides where to execute the job.
loadExecutable(String) - -Static method in class compbio.engine.client.Util -: -
loadRunConfiguration(RunConfiguration) - -Method in class compbio.engine.client.ConfExecutable -: -
loadRunConfiguration(InputStream) - -Method in class compbio.engine.client.ConfExecutable -: -
loadRunConfiguration(InputStream) - -Method in interface compbio.engine.client.ConfiguredExecutable -: -
loadRunConfiguration(RunConfiguration) - -Method in interface compbio.engine.client.Executable -: -
loadRunConfiguration(RunConfiguration) - -Method in class compbio.engine.client.SkeletalExecutable -: -
loadRunConfiguration(RunConfiguration) - -Method in class compbio.runner._impl.NetNglyc -: -
loadRunConfiguration(RunConfiguration) - -Method in class compbio.runner._SkeletalCommandBuilder -: Deprecated. -
LOCAL_ENGINE_LIMIT_PRESET - -Static variable in class compbio.metadata.PresetManager -: -
LOCAL_WORK_DIRECTORY - -Static variable in class compbio.engine.Configurator -: -
LocalEngineUtil - Class in compbio.engine.local
LocalEngineUtil() - -Constructor for class compbio.engine.local.LocalEngineUtil -: -
LocalExecutorService - Class in compbio.engine.local
LocalRunner - Class in compbio.engine.local
LocalRunner(ConfiguredExecutable<?>) - -Constructor for class compbio.engine.local.LocalRunner -: -
log - -Static variable in class compbio.runner.Util -: -
log(Timer, String) - -Method in class compbio.ws.server._WSLogger -: Deprecated. -
log(Timer, String, String) - -Method in class compbio.ws.server._WSLogger -: Deprecated. -
logAll(Timer, String) - -Method in class compbio.ws.server._WSLogger -: Deprecated. -
logFine(Timer, String) - -Method in class compbio.ws.server._WSLogger -: Deprecated. -
LOOPS_EXPECTATION_THRESHOLD - -Variable in class compbio.runner.disorder.Disembl -: -