-M-Index -

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-M

Mafft - Class in compbio.runner.msa
Mafft() - -Constructor for class compbio.runner.msa.Mafft -: -
MafftWS - Class in compbio.ws.server
MafftWS() - -Constructor for class compbio.ws.server.MafftWS -: -
main(String[]) - -Static method in class compbio.pipeline._jpred.BlastBlastComparator -: args[0] is assumed to be the name of a Blast output file -
main(String[]) - -Static method in class compbio.pipeline._jpred.BlastHmmerComparator -: args[0] is assumed to be the name of a Blast output file -
main(String[]) - -Static method in class compbio.pipeline._jpred.BlastParser -: args[0] is assumed to be the name of a Blast output file -
main(String[]) - -Static method in class compbio.pipeline._jpred.JackHmmerHitParser -: -
main(String[]) - -Static method in class compbio.pipeline._jpred.Pairwise -: -
main(String[]) - -Static method in class compbio.runner._impl.OB -: -
main(String[]) - -Static method in class compbio.stat.collector.ExecutionStatCollector -: Not in use -
main(String[]) - -Static method in class compbio.stat.collector.StatDB -: -
main(String[]) - -Static method in class compbio.ws.client.AAConClient -: Starts command line client, if no parameters are supplied prints help. -
main(String[]) - -Static method in class compbio.ws.client.Jws2Client -: Starts command line client, if no parameter are supported print help. -
main(String[]) - -Static method in class compbio.ws.client.WSTester -: Test JWS2 web services -
main(String[]) - -Static method in class compbio.ws.server.SimpleWSPublisher -: Deprecated. -
Mcl - Class in compbio.runner._impl
Mcl(String) - -Constructor for class compbio.runner._impl.Mcl -: -
mergeEnvVariables(Map<String, String>, Map<String, String>) - -Static method in class compbio.engine.client.Util -: -
Metadata<T> - Interface in compbio.data.msa
MetadataHelper - Class in compbio.ws.client
MetadataHelper() - -Constructor for class compbio.ws.client.MetadataHelper -: -
MsaWS<T> - Interface in compbio.data.msa: Multiple Sequence Alignment (MSA) Web Services Interface
Muscle - Class in compbio.runner.msa
Muscle() - -Constructor for class compbio.runner.msa.Muscle -: Default options are - - -clwstrict - write output in clustal format -
MuscleWS - Class in compbio.ws.server
MuscleWS() - -Constructor for class compbio.ws.server.MuscleWS -: -