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NetNglyc - Class in compbio.runner._impl
NetNglyc() - -Constructor for class compbio.runner._impl.NetNglyc -: -
newCommandBuilder(List<? extends Option<T>>, String) - -Static method in class compbio.engine.client.CommandBuilder -: This produces the same result as getCommands method. -
newConfExecutable(RunConfiguration) - -Static method in class compbio.engine.client.ConfExecutable -: -
newFilePuller(String, int) - -Static method in class compbio.engine.FilePuller -: -
newInstance(Map<String, Set<Score>>) - -Static method in class compbio.data.sequence.ScoreManager -: -
newInstanceSingleScore(Map<String, Score>) - -Static method in class compbio.data.sequence.ScoreManager -: -
newInstanceSingleSequence(Set<Score>) - -Static method in class compbio.data.sequence.ScoreManager -: -
newLimitExceeded(Limit<?>, List<FastaSequence>) - -Static method in exception compbio.metadata.LimitExceededException -: -
newProgressPuller(String) - -Static method in class compbio.engine.FilePuller -: Progress Puller is designed to read 3 characters from the beginning of - the file, nothing more. -
newStatCollecton(Date, Date) - -Static method in class compbio.stat.servlet.util.StatCollection -: -
next() - -Method in class compbio.data.sequence.FastaReader -: Reads the next FastaSequence from the input -
NON_AA - -Static variable in class compbio.data.sequence.SequenceUtil -: inversion of AA pattern -
NON_NUCLEOTIDE - -Static variable in class compbio.data.sequence.SequenceUtil -: Non nucleotide -
NONWORD - -Static variable in class compbio.data.sequence.SequenceUtil -: Non word -
NUCLEOTIDE - -Static variable in class compbio.data.sequence.SequenceUtil -: Nucleotides a, t, g, c, u -