+T-Index +

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+ + + +A B C D E F G H I J K L M N O P R S T U V W _

+T

Tcoffee - Class in compbio.runner.msa
Tcoffee() - +Constructor for class compbio.runner.msa.Tcoffee +: +
TCOFFEE_INFO - +Static variable in enum compbio.ws.client.Services +: +
TcoffeeWS - Class in compbio.ws.server
TcoffeeWS() - +Constructor for class compbio.ws.server.TcoffeeWS +: +
termSignal() - +Method in class compbio.engine.cluster.drmaa.StatisticManager +: +
TestAllServices - Class in compbio.data.msa.jaxws
TestAllServices() - +Constructor for class compbio.data.msa.jaxws.TestAllServices +: +
testAllServices() - +Method in interface compbio.data.msa.RegistryWS +: Test all JABAWS services on the server +
testAllServices() - +Method in class compbio.ws.server.RegistryWS +: TODO improve reporting. +
TestAllServicesResponse - Class in compbio.data.msa.jaxws
TestAllServicesResponse() - +Constructor for class compbio.data.msa.jaxws.TestAllServicesResponse +: +
TestService - Class in compbio.data.msa.jaxws
TestService() - +Constructor for class compbio.data.msa.jaxws.TestService +: +
testService(Services) - +Method in interface compbio.data.msa.RegistryWS +: Test a particular service +
testService(String, Services, PrintWriter) - +Static method in class compbio.ws.client.Jws2Client +: Asks registry to test the service on the host hostname +
testService(Services) - +Method in class compbio.ws.server.RegistryWS +: +
TestServiceResponse - Class in compbio.data.msa.jaxws
TestServiceResponse() - +Constructor for class compbio.data.msa.jaxws.TestServiceResponse +: +
to - +Variable in class compbio.data.sequence.Range +: +
toCommand(String) - +Method in class compbio.metadata.Option +: Convert the option to the command string. +
toCommand(String) - +Method in class compbio.metadata.Parameter +: +
toString() - +Method in class compbio.data.sequence.Alignment +: +
toString() - +Method in class compbio.data.sequence.FastaSequence +: Same as oneLineFasta +
toString() - +Method in class compbio.data.sequence.Range +: +
toString() - +Method in class compbio.data.sequence.Score +: +
toString() - +Method in class compbio.engine.client.CommandBuilder +: +
toString() - +Method in class compbio.engine.client.ConfExecutable +: +
toString() - +Method in class compbio.engine.client.RunConfiguration +: +
toString() - +Method in class compbio.engine.client.SkeletalExecutable +: +
toString() - +Method in class compbio.engine.cluster.drmaa.StatisticManager +: +
toString() - +Method in enum compbio.engine.cluster.dundee._Queue +: Deprecated. +
toString() - +Method in class compbio.engine.conf._Key +: Deprecated. +
toString() - +Method in class compbio.engine.FilePuller +: +
toString() - +Method in class compbio.engine.Job +: +
toString() - +Method in class compbio.metadata.ChunkHolder +: +
toString() - +Method in class compbio.metadata.Limit +: +
toString() - +Method in class compbio.metadata.LimitsManager +: +
toString() - +Method in class compbio.metadata.Option +: +
toString() - +Method in class compbio.metadata.Parameter +: +
toString() - +Method in class compbio.metadata.Preset +: +
toString() - +Method in class compbio.metadata.PresetManager +: +
toString() - +Method in class compbio.metadata.RunnerConfig +: +
toString() - +Method in class compbio.metadata.ValueConstrain +: +
toString() - +Method in class compbio.pipeline._jpred.Hit +: +
toString() - +Method in class compbio.pipeline._jpred.PScore +: +
toString() - +Method in class compbio.stat.collector.JobStat +: +
toString() - +Method in class compbio.stat.collector.StatProcessor +: +
toString() - +Method in class compbio.stat.servlet.ServiceTestResult +: +
toString() - +Method in class compbio.stat.servlet.util.StatCollection +: +
toString(Set<Services>) - +Static method in enum compbio.ws.client.Services +: +
Totals - Class in compbio.stat.servlet.util
Totals() - +Constructor for class compbio.stat.servlet.util.Totals +: +