X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Findex-files%2Findex-22.html;h=22c0b586aec248bdb8d9ae676895cc1542bf90c0;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=8537653a1286f9674950fa659d7d34889205d409;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/full_javadoc/index-files/index-22.html b/website/full_javadoc/index-files/index-22.html index 8537653..22c0b58 100644 --- a/website/full_javadoc/index-files/index-22.html +++ b/website/full_javadoc/index-files/index-22.html @@ -2,12 +2,12 @@ - + W-Index - + @@ -109,6 +109,9 @@ Method in class compbio.engine.cluster.drmaa.WHITE_SPACE - Static variable in class compbio.data.sequence.SequenceUtil
A whitespace character: [\t\n\x0B\f\r] +
write(TreeSet<Score>, Writer) - +Static method in class compbio.data.sequence.Score +
Outputs the List of Score objects into the Output stream.
write(RunConfiguration) - Static method in class compbio.engine.client.RunConfiguration
  @@ -118,7 +121,7 @@ Method in class compbio.engine.conf.writeAndValidate(Object, String, OutputStream) - Method in class compbio.engine.conf.RunnerConfigMarshaller
  -
writeClustalAlignment(OutputStream, Alignment) - +
writeClustalAlignment(Writer, Alignment) - Static method in class compbio.data.sequence.ClustalAlignmentUtil
Write Clustal formatted alignment Limitations: does not record the consensus. @@ -129,6 +132,9 @@ Static method in class compbio.data.sequence.writeFasta(OutputStream, List<FastaSequence>) - Static method in class compbio.data.sequence.SequenceUtil
Writes FastaSequence in the file, each sequence will take one line only +
writeFastaKeepTheStream(OutputStream, List<FastaSequence>, int) - +Static method in class compbio.data.sequence.SequenceUtil +
 
writeFile(String, String, String, boolean) - Static method in class compbio.engine.client.Util
  @@ -138,6 +144,12 @@ Static method in class compbio.runner.writeMarker(String, JobStatus) - Static method in class compbio.engine.client.Util
  +
writeOut(Writer) - +Method in class compbio.data.sequence.ScoreManager.ScoreHolder +
  +
writeOut(Writer) - +Method in class compbio.data.sequence.ScoreManager +
 
writeStatFile(String, String) - Static method in class compbio.engine.client.Util
  @@ -158,9 +170,9 @@ Constructor for exception compbio.metadata.WrongParameterExceptionBean - Class in compbio.data.msa.jaxws
This class was generated by the JAX-WS RI.
WrongParameterExceptionBean() - Constructor for class compbio.data.msa.jaxws.WrongParameterExceptionBean
  -
WSTester - Class in compbio.ws.client
Class for testing web services
WSTester() - +
WSTester - Class in compbio.ws.client
Class for testing web services
WSTester(String, PrintWriter) - Constructor for class compbio.ws.client.WSTester -
  +
Construct an instance of JABAWS tester
WSUtil - Class in compbio.ws.server
 
WSUtil() - Constructor for class compbio.ws.server.WSUtil