X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Findex-files%2Findex-22.html;h=22c0b586aec248bdb8d9ae676895cc1542bf90c0;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=8537653a1286f9674950fa659d7d34889205d409;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git
diff --git a/website/full_javadoc/index-files/index-22.html b/website/full_javadoc/index-files/index-22.html
index 8537653..22c0b58 100644
--- a/website/full_javadoc/index-files/index-22.html
+++ b/website/full_javadoc/index-files/index-22.html
@@ -2,12 +2,12 @@
-
+
W-Index
-
+
@@ -109,6 +109,9 @@ Method in class compbio.engine.cluster.drmaa.WHITE_SPACE -
Static variable in class compbio.data.sequence.SequenceUtil
A whitespace character: [\t\n\x0B\f\r]
+ write(TreeSet<Score>, Writer) -
+Static method in class compbio.data.sequence.Score
+Outputs the List of Score objects into the Output stream.
write(RunConfiguration) -
Static method in class compbio.engine.client.RunConfiguration
@@ -118,7 +121,7 @@ Method in class compbio.engine.conf.writeAndValidate(Object, String, OutputStream) -
Method in class compbio.engine.conf.RunnerConfigMarshaller
- writeClustalAlignment(OutputStream, Alignment) -
+writeClustalAlignment(Writer, Alignment) -
Static method in class compbio.data.sequence.ClustalAlignmentUtil
Write Clustal formatted alignment Limitations: does not record the
consensus.
@@ -129,6 +132,9 @@ Static method in class compbio.data.sequence.writeFasta(OutputStream, List<FastaSequence>) -
Static method in class compbio.data.sequence.SequenceUtil
Writes FastaSequence in the file, each sequence will take one line only
+ writeFastaKeepTheStream(OutputStream, List<FastaSequence>, int) -
+Static method in class compbio.data.sequence.SequenceUtil
+
writeFile(String, String, String, boolean) -
Static method in class compbio.engine.client.Util
@@ -138,6 +144,12 @@ Static method in class compbio.runner.writeMarker(String, JobStatus) -
Static method in class compbio.engine.client.Util
+ writeOut(Writer) -
+Method in class compbio.data.sequence.ScoreManager.ScoreHolder
+
+ writeOut(Writer) -
+Method in class compbio.data.sequence.ScoreManager
+
writeStatFile(String, String) -
Static method in class compbio.engine.client.Util
@@ -158,9 +170,9 @@ Constructor for exception compbio.metadata.WrongParameterExceptionBean - Class in compbio.data.msa.jaxws This class was generated by the JAX-WS RI. WrongParameterExceptionBean() -
Constructor for class compbio.data.msa.jaxws.WrongParameterExceptionBean
- WSTester - Class in compbio.ws.client Class for testing web services WSTester() -
+WSTester - Class in compbio.ws.client Class for testing web services WSTester(String, PrintWriter) -
Constructor for class compbio.ws.client.WSTester
-
+Construct an instance of JABAWS tester
WSUtil - Class in compbio.ws.server WSUtil() -
Constructor for class compbio.ws.server.WSUtil