X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Findex-files%2Findex-23.html;h=e8e456409141afd0bb17bc13b5df87ffb5054231;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=88e7b27f65cfadc7ae73dfc0ad38ab81982ae55f;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/website/full_javadoc/index-files/index-23.html b/website/full_javadoc/index-files/index-23.html
index 88e7b27..e8e4564 100644
--- a/website/full_javadoc/index-files/index-23.html
+++ b/website/full_javadoc/index-files/index-23.html
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:51 GMT 2010 -->
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->
 <TITLE>
 _-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2010-02-17">
+<META NAME="date" CONTENT="2011-08-12">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -82,33 +82,24 @@ function windowTitle()
 <A NAME="___"><!-- --></A><H2>
 <B>_</B></H2>
 <DL>
-<DT><A HREF="../compbio/engine/cluster/drmaa/_DrmaaExample.html" title="class in compbio.engine.cluster.drmaa"><B>_DrmaaExample</B></A> - Class in <A HREF="../compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A><DD>&nbsp;<DT><A HREF="../compbio/engine/cluster/drmaa/_DrmaaExample.html#_DrmaaExample()"><B>_DrmaaExample()</B></A> - 
-Constructor for class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/_DrmaaExample.html" title="class in compbio.engine.cluster.drmaa">_DrmaaExample</A>
-<DD>&nbsp;
-<DT><A HREF="../compbio/engine/cluster/drmaa/_JobStatus.html" title="class in compbio.engine.cluster.drmaa"><B>_JobStatus</B></A> - Class in <A HREF="../compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A><DD>&nbsp;<DT><A HREF="../compbio/engine/cluster/drmaa/_JobStatus.html#_JobStatus()"><B>_JobStatus()</B></A> - 
-Constructor for class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/_JobStatus.html" title="class in compbio.engine.cluster.drmaa">_JobStatus</A>
-<DD>&nbsp;
 <DT><A HREF="../compbio/runner/_jpred/_Jpred.html" title="class in compbio.runner._jpred"><B>_Jpred</B></A> - Class in <A HREF="../compbio/runner/_jpred/package-summary.html">compbio.runner._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/runner/_jpred/_Jpred.html#_Jpred()"><B>_Jpred()</B></A> - 
 Constructor for class compbio.runner._jpred.<A HREF="../compbio/runner/_jpred/_Jpred.html" title="class in compbio.runner._jpred">_Jpred</A>
 <DD>&nbsp;
-<DT><A HREF="../compbio/engine/conf/_Key.html" title="class in compbio.engine.conf"><B>_Key</B></A> - Class in <A HREF="../compbio/engine/conf/package-summary.html">compbio.engine.conf</A><DD>&nbsp;<DT><A HREF="../compbio/engine/conf/_Key.html#_Key(java.lang.Class)"><B>_Key(Class&lt;?&gt;)</B></A> - 
+<DT><A HREF="../compbio/engine/conf/_Key.html" title="class in compbio.engine.conf"><B>_Key</B></A> - Class in <A HREF="../compbio/engine/conf/package-summary.html">compbio.engine.conf</A><DD><B>Deprecated.</B>&nbsp;<DT><A HREF="../compbio/engine/conf/_Key.html#_Key(java.lang.Class)"><B>_Key(Class&lt;?&gt;)</B></A> - 
 Constructor for class compbio.engine.conf.<A HREF="../compbio/engine/conf/_Key.html" title="class in compbio.engine.conf">_Key</A>
-<DD>&nbsp;
-<DT><A HREF="../compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner"><B>_NativeSpecHelper</B></A> - Class in <A HREF="../compbio/runner/package-summary.html">compbio.runner</A><DD>&nbsp;<DT><A HREF="../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int)"><B>_NativeSpecHelper(int)</B></A> - 
+<DD><B>Deprecated.</B>&nbsp;&nbsp;
+<DT><A HREF="../compbio/ws/server/_MsaService.html" title="class in compbio.ws.server"><B>_MsaService</B></A>&lt;<A HREF="../compbio/ws/server/_MsaService.html" title="type parameter in _MsaService">T</A>&gt; - Class in <A HREF="../compbio/ws/server/package-summary.html">compbio.ws.server</A><DD>TODO to complete after the approach is tested with SequenceAnnotation!
+ 
+ Common methods for all SequenceAnnotation web services<DT><A HREF="../compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner"><B>_NativeSpecHelper</B></A> - Class in <A HREF="../compbio/runner/package-summary.html">compbio.runner</A><DD><B>Deprecated.</B>&nbsp;<DT><A HREF="../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int)"><B>_NativeSpecHelper(int)</B></A> - 
 Constructor for class compbio.runner.<A HREF="../compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner">_NativeSpecHelper</A>
-<DD>&nbsp;
+<DD><B>Deprecated.</B>&nbsp;&nbsp;
 <DT><A HREF="../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int, int)"><B>_NativeSpecHelper(int, int)</B></A> - 
 Constructor for class compbio.runner.<A HREF="../compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner">_NativeSpecHelper</A>
-<DD>&nbsp;
-<DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee"><B>_Queue</B></A> - Enum in <A HREF="../compbio/engine/cluster/dundee/package-summary.html">compbio.engine.cluster.dundee</A><DD>&nbsp;<DT><A HREF="../compbio/engine/cluster/dundee/_QueueConstraints.html" title="class in compbio.engine.cluster.dundee"><B>_QueueConstraints</B></A> - Class in <A HREF="../compbio/engine/cluster/dundee/package-summary.html">compbio.engine.cluster.dundee</A><DD>&nbsp;<DT><A HREF="../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner"><B>_SkeletalCommandBuilder</B></A> - Class in <A HREF="../compbio/runner/package-summary.html">compbio.runner</A><DD>&nbsp;<DT><A HREF="../compbio/runner/_SkeletalCommandBuilder.html#_SkeletalCommandBuilder()"><B>_SkeletalCommandBuilder()</B></A> - 
+<DD><B>Deprecated.</B>&nbsp;&nbsp;
+<DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee"><B>_Queue</B></A> - Enum in <A HREF="../compbio/engine/cluster/dundee/package-summary.html">compbio.engine.cluster.dundee</A><DD><B>Deprecated.</B>&nbsp;<DT><A HREF="../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner"><B>_SkeletalCommandBuilder</B></A> - Class in <A HREF="../compbio/runner/package-summary.html">compbio.runner</A><DD><B>Deprecated.</B>&nbsp;<DT><A HREF="../compbio/runner/_SkeletalCommandBuilder.html#_SkeletalCommandBuilder()"><B>_SkeletalCommandBuilder()</B></A> - 
 Constructor for class compbio.runner.<A HREF="../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>
-<DD>&nbsp;
-<DT><A HREF="../compbio/engine/local/_TrackingExecutor.html" title="class in compbio.engine.local"><B>_TrackingExecutor</B></A> - Class in <A HREF="../compbio/engine/local/package-summary.html">compbio.engine.local</A><DD>This executor extends standard Java ExecutorService by adding the method to
- obtain all Runnables which were running and did not complete upon executor
- termination.<DT><A HREF="../compbio/engine/local/_TrackingExecutor.html#_TrackingExecutor(java.util.concurrent.ExecutorService)"><B>_TrackingExecutor(ExecutorService)</B></A> - 
-Constructor for class compbio.engine.local.<A HREF="../compbio/engine/local/_TrackingExecutor.html" title="class in compbio.engine.local">_TrackingExecutor</A>
-<DD>&nbsp;
-</DL>
+<DD><B>Deprecated.</B>&nbsp;&nbsp;
+<DT><A HREF="../compbio/ws/server/_WSLogger.html" title="class in compbio.ws.server"><B>_WSLogger</B></A> - Class in <A HREF="../compbio/ws/server/package-summary.html">compbio.ws.server</A><DD><B>Deprecated.</B>&nbsp;</DL>
 <HR>
 
 
