-D-Index -

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Findex-files%2Findex-4.html;fp=website%2Ffull_javadoc%2Findex-files%2Findex-4.html;h=0000000000000000000000000000000000000000;hb=0bbebf27d045b1345bc042bdf24ef2e6808df251;hp=5da4d5a24deafec257ac3738bf600a79dbdf078b;hpb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;p=jabaws.git diff --git a/website/full_javadoc/index-files/index-4.html b/website/full_javadoc/index-files/index-4.html deleted file mode 100644 index 5da4d5a..0000000 --- a/website/full_javadoc/index-files/index-4.html +++ /dev/null @@ -1,198 +0,0 @@ - - - - - - -D-Index - - - - - - - - - - - - -

- - - - - - - - - - - - - - - -

- - - - - - - - - - - - -

Overview

Package

Class

Use

Tree

Deprecated

Index

Help

- -

- PREV LETTER - NEXT LETTER

- FRAMES - NO FRAMES - - - - -

- - - -A B C D E F G H I J K L M N O P R S T U V W _

-D

deepClean() - -Method in class compbio.engine.cluster.drmaa.JobRunner -: -
deepCleanSequence(String) - -Static method in class compbio.data.sequence.SequenceUtil -: Removes all special characters and digits as well as whitespace chars - from the sequence -
DEFAULT_COLUMN_SCORE - -Static variable in enum compbio.data.sequence.SMERFSConstraints -: Default column scoring schema -
DEFAULT_GAP_THRESHOLD - -Static variable in enum compbio.data.sequence.SMERFSConstraints -: Default gap threshold value for SMERFS algorithm -
DEFAULT_WINDOW_SIZE - -Static variable in enum compbio.data.sequence.SMERFSConstraints -: Default window size value for SMERFS algorithm -
deleteAllFiles(String) - -Static method in class compbio.engine.Cleaner -: Deprecated. -
deleteFiles(ConfiguredExecutable<?>) - -Static method in class compbio.engine.Cleaner -: Deprecated. This method returns true if all files specified by List files were - successfully removed or there was no files to remove (files list was - empty) -
DELIM - -Static variable in class compbio.engine.conf._Key -: Deprecated. -
DELIM - -Static variable in class compbio.engine.conf.DirectoryManager -: -
DIGIT - -Static variable in class compbio.data.sequence.SequenceUtil -: A digit -
DirectoryManager - Class in compbio.engine.conf
DirectoryManager() - -Constructor for class compbio.engine.conf.DirectoryManager -: -
disconnect() - -Method in class compbio.engine.FilePuller -: -
Disembl - Class in compbio.runner.disorder: DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops - fold_rem465 sequence_file print - - 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' - - This version of DisEMBL is 1.4 (latest available for download in Feb 2011) - capable of outputting raw values - - The values of the parameters are hard coded in DisEMBL.py script.
Disembl() - -Constructor for class compbio.runner.disorder.Disembl -: -
DisemblWS - Class in compbio.ws.server
DisemblWS() - -Constructor for class compbio.ws.server.DisemblWS -: -
DisorderMethod - Enum in compbio.data.sequence
DisplayStat - Class in compbio.stat.servlet
DisplayStat() - -Constructor for class compbio.stat.servlet.DisplayStat -: -