+E-Index +

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+ + + +A B C D E F G H I J K L M N O P R S T U V W _

+E

Environment - Class in compbio.runner._impl: This is utility class to encapsulate environmental variables like directory paths
EnvVariableProcessor - Class in compbio.engine.client
EnvVariableProcessor() - +Constructor for class compbio.engine.client.EnvVariableProcessor +: +
equals(Object) - +Method in class compbio.data.msa.Category +: +
equals(Object) - +Method in class compbio.data.sequence.Alignment +: Please note that this implementation does not take the order of sequences + into account! +
equals(Object) - +Method in class compbio.data.sequence.AlignmentMetadata +: +
equals(Object) - +Method in class compbio.data.sequence.FastaSequence +: +
equals(Object) - +Method in class compbio.data.sequence.Range +: +
equals(Object) - +Method in class compbio.data.sequence.Score +: +
equals(Object) - +Method in class compbio.data.sequence.ScoreManager +: +
equals(Object) - +Method in class compbio.data.sequence.ScoreManager.ScoreHolder +: +
equals(Object) - +Method in class compbio.engine.client.CommandBuilder +: +
equals(Object) - +Method in class compbio.engine.client.RunConfiguration +: +
equals(Object) - +Method in class compbio.engine.client.SkeletalExecutable +: +
equals(Object) - +Method in class compbio.engine.ClusterJobId +: +
equals(Object) - +Method in class compbio.engine.conf._Key +: Deprecated. +
equals(Object) - +Method in class compbio.engine.FilePuller +: +
equals(Object) - +Method in class compbio.engine.Job +: +
equals(Object) - +Method in class compbio.metadata.ChunkHolder +: +
equals(Object) - +Method in class compbio.metadata.Limit +: +
equals(Object) - +Method in class compbio.metadata.Option +: +
equals(Object) - +Method in class compbio.metadata.Parameter +: +
equals(Object) - +Method in class compbio.metadata.Preset +: +
equals(Object) - +Method in class compbio.metadata.RunnerConfig +: +
equals(Object) - +Method in class compbio.metadata.ValueConstrain +: +
equals(Object) - +Method in class compbio.pipeline._jpred.Hit +: +
equals(Object) - +Method in class compbio.pipeline._jpred.PScore +: +
equals(Object) - +Method in class compbio.stat.collector.JobStat +: +
equals(Object) - +Method in class compbio.stat.servlet.ServiceTestResult +: +
equals(Object) - +Method in class compbio.stat.servlet.util.StatCollection +: +
ERROR - +Static variable in class compbio.engine.client.SkeletalExecutable +: +
Executable<T> - Interface in compbio.engine.client: Interface to a native executable.
Executable.ExecProvider - Enum in compbio.engine.client
ExecutableWrapper - Class in compbio.engine.local
ExecutableWrapper(ConfiguredExecutable<?>, String) - +Constructor for class compbio.engine.local.ExecutableWrapper +: +
executeJob() - +Method in class compbio.engine.cluster.drmaa.JobRunner +: +
executeJob() - +Method in class compbio.engine.local.LocalRunner +: +
executeJob() - +Method in interface compbio.engine.SyncExecutor +: Execute the job +
ExecutionStatCollector - Class in compbio.stat.collector: Number of runs of each WS = number of folders with name + + Number of successful runs = all runs with no result file + + Per period of time = limit per file creating time Runtime (avg/max) = + + started time - finished time + + Task & result size = result.size + + Abandoned runs - not collected runs + + Cancelled runs - cancelled + + Cluster vs local runs + + Reasons for failure = look in the err out? + + + Metadata required: + + work directory for local and cluster tasks = from Helper or cmd parameter.
ExecutionStatCollector(String, int) - +Constructor for class compbio.stat.collector.ExecutionStatCollector +: List subdirectories in the job directory +