-I-Index -

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-I

id - -Variable in class compbio.data.sequence.ScoreManager.ScoreHolder -: -
initPull() - -Method in class compbio.engine.FilePuller -: -
INPUT - -Static variable in class compbio.engine.client.SkeletalExecutable -: -
IOHelper - Class in compbio.ws.client
IOHelper() - -Constructor for class compbio.ws.client.IOHelper -: -
IS_CLUSTER_ENGINE_ENABLED - -Static variable in class compbio.engine.Configurator -: -
IS_LOCAL_ENGINE_ENABLED - -Static variable in class compbio.engine.Configurator -: -
isAbsolutePath(String) - -Static method in class compbio.engine.client.PathValidator -: Whether a certain path is absolute or not is operation system dependent! -
isAmbiguosProtein(String) - -Static method in class compbio.data.sequence.SequenceUtil -: Check whether the sequence confirms to amboguous protein sequence -
isClusterJob() - -Method in class compbio.stat.collector.JobStat -: -
isDefault() - -Method in class compbio.metadata.Limit -: -
isExceeded(List<FastaSequence>) - -Method in class compbio.metadata.Limit -: Checks if the number of sequences or their average length in the dataset - exceeds this limit. -
isFileCreated() - -Method in class compbio.engine.FilePuller -: -
isJavaLibrary(Class<?>) - -Static method in class compbio.engine.client.Util -: Returns true of executableName.jar.file property has some value in the - Executable.properties file, false otherwise. -
isMarked(String, JobStatus) - -Static method in class compbio.engine.client.Util -: -
isNonAmbNucleotideSequence(String) - -Static method in class compbio.data.sequence.SequenceUtil -: Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one - (!) - B char -
isNucleotideSequence(FastaSequence) - -Static method in class compbio.data.sequence.SequenceUtil -: -
IsOperating - Class in compbio.data.msa.jaxws
IsOperating() - -Constructor for class compbio.data.msa.jaxws.IsOperating -: -
isOperating(Services) - -Method in interface compbio.data.msa.RegistryWS -: Check whether a particular web service is working on this server -
isOperating(Services) - -Method in class compbio.ws.server.RegistryWS -: -
IsOperatingResponse - Class in compbio.data.msa.jaxws
IsOperatingResponse() - -Constructor for class compbio.data.msa.jaxws.IsOperatingResponse -: -
isProteinSequence(String) - -Static method in class compbio.data.sequence.SequenceUtil -: -
isRequired() - -Method in class compbio.metadata.Option -: Flag that indicated that this option must be specified in the command - line for an executable to run -
isReturn() - -Method in class compbio.data.msa.jaxws.CancelJobResponse -: -
isReturn() - -Method in class compbio.data.msa.jaxws.IsOperatingResponse -: -
isValidClustalFile(InputStream) - -Static method in class compbio.data.sequence.ClustalAlignmentUtil -: Please note this method closes the input stream provided as a parameter -
isValidDirectory(String) - -Static method in class compbio.engine.client.PathValidator -: -
isValidExecutable(String) - -Static method in class compbio.engine.client.PathValidator -: -
isValidJobId(String) - -Static method in class compbio.engine.client.Util -: -
IUPred - Class in compbio.runner.disorder: iupred sequenceFile - - Maximum sequence length is 40000 chars.
IUPred() - -Constructor for class compbio.runner.disorder.IUPred -: -
IUPredWS - Class in compbio.ws.server
IUPredWS() - -Constructor for class compbio.ws.server.IUPredWS -: -