X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Foverview-summary.html;h=959b5edd5e56e4235617ca271fad1416e1d44c3e;hb=5be600c3985aa7bcb8d8b51d77d773c76e6802bb;hp=6c2e8e497fa7b541253c563330a2451b58dde156;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git

diff --git a/website/full_javadoc/overview-summary.html b/website/full_javadoc/overview-summary.html
index 6c2e8e4..959b5ed 100644
--- a/website/full_javadoc/overview-summary.html
+++ b/website/full_javadoc/overview-summary.html
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:51 GMT 2010 -->
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->
 <TITLE>
 Overview
 </TITLE>
 
-<META NAME="date" CONTENT="2010-02-17">
+<META NAME="date" CONTENT="2011-08-12">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 
@@ -79,6 +79,11 @@ function windowTitle()
 <!-- ========= END OF TOP NAVBAR ========= -->
 
 <HR>
+<CENTER>
+<H1>
+JABAWS 2 javadoc
+</H1>
+</CENTER>
 
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
@@ -91,7 +96,7 @@ function windowTitle()
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/data/msa/package-summary.html">compbio.data.msa</A></B></TD>
-<TD>&nbsp;</TD>
+<TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></B></TD>
@@ -99,8 +104,8 @@ function windowTitle()
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/data/sequence/package-summary.html">compbio.data.sequence</A></B></TD>
-<TD>A data model for multiple sequence alignment web services 
- Classes in this package have no dependencies to other sources in the project.</TD>
+<TD>A data model for multiple sequence alignment web services and utility methods
+ that work on the objects of this model.</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/engine/package-summary.html">compbio.engine</A></B></TD>
@@ -108,11 +113,11 @@ function windowTitle()
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/engine/client/package-summary.html">compbio.engine.client</A></B></TD>
-<TD>Classes and interfaces representing an input for engines.</TD>
+<TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A></B></TD>
-<TD>An cluster engine classes responsible for execution of Executables on the clusters.</TD>
+<TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/engine/cluster/dundee/package-summary.html">compbio.engine.cluster.dundee</A></B></TD>
@@ -120,12 +125,11 @@ function windowTitle()
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/engine/conf/package-summary.html">compbio.engine.conf</A></B></TD>
-<TD>Classes commonly used by both engines.</TD>
+<TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/engine/local/package-summary.html">compbio.engine.local</A></B></TD>
-<TD>An local engine classes responsible for execution of Executables on the local computer 
- (the same machine as JVM running these classes).</TD>
+<TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/metadata/package-summary.html">compbio.metadata</A></B></TD>
@@ -149,18 +153,35 @@ function windowTitle()
 <TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
+<TD WIDTH="20%"><B><A HREF="compbio/runner/conservation/package-summary.html">compbio.runner.conservation</A></B></TD>
+<TD>&nbsp;</TD>
+</TR>
+<TR BGCOLOR="white" CLASS="TableRowColor">
+<TD WIDTH="20%"><B><A HREF="compbio/runner/disorder/package-summary.html">compbio.runner.disorder</A></B></TD>
+<TD>&nbsp;</TD>
+</TR>
+<TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/runner/msa/package-summary.html">compbio.runner.msa</A></B></TD>
 <TD>Wrappers for native executables for multiple sequence alignment (msa)</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD WIDTH="20%"><B><A HREF="compbio/runner/psiblast/package-summary.html">compbio.runner.psiblast</A></B></TD>
+<TD WIDTH="20%"><B><A HREF="compbio/stat/collector/package-summary.html">compbio.stat.collector</A></B></TD>
 <TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD WIDTH="20%"><B><A HREF="compbio/ws/client/package-summary.html">compbio.ws.client</A></B></TD>
+<TD WIDTH="20%"><B><A HREF="compbio/stat/servlet/package-summary.html">compbio.stat.servlet</A></B></TD>
 <TD>&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
+<TD WIDTH="20%"><B><A HREF="compbio/stat/servlet/util/package-summary.html">compbio.stat.servlet.util</A></B></TD>
+<TD>&nbsp;</TD>
+</TR>
+<TR BGCOLOR="white" CLASS="TableRowColor">
+<TD WIDTH="20%"><B><A HREF="compbio/ws/client/package-summary.html">compbio.ws.client</A></B></TD>
+<TD>A command line client and web services testing client for    
+ JAva Bioinformatics Analysis Web Services.</TD>
+</TR>
+<TR BGCOLOR="white" CLASS="TableRowColor">
 <TD WIDTH="20%"><B><A HREF="compbio/ws/server/package-summary.html">compbio.ws.server</A></B></TD>
 <TD>&nbsp;</TD>
 </TR>

compbio.data.msa		Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.data.sequence	A data model for multiple sequence alignment web services - Classes in this package have no dependencies to other sources in the project.	A data model for multiple sequence alignment web services and utility methods + that work on the objects of this model.
compbio.engine
compbio.engine.client	Classes and interfaces representing an input for engines.
compbio.engine.cluster.drmaa	An cluster engine classes responsible for execution of Executables on the clusters.
compbio.engine.cluster.dundee
compbio.engine.conf	Classes commonly used by both engines.
compbio.engine.local	An local engine classes responsible for execution of Executables on the local computer - (the same machine as JVM running these classes).
compbio.metadata
compbio.runner.conservation
compbio.runner.disorder
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.runner.psiblast	compbio.stat.collector
compbio.ws.client	compbio.stat.servlet
compbio.stat.servlet.util
compbio.ws.client	A command line client and web services testing client for + JAva Bioinformatics Analysis Web Services.
compbio.ws.server