X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Findex.html;fp=website%2Findex.html;h=fde5fa7318faa1e34d99bcd7690e51de6e397172;hb=a284b66c119ee21683202f51e5276d5a5ee7f121;hp=e93cb3c983b100ddb5d43a65056ca0d5d2ab57f3;hpb=ff51b187c7dc487caa33b3a4af1d109caa001dc4;p=jabaws.git

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 <tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" width="265" height="67" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>
 <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>
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 <h2 id="headtitle">JABAWS 2</h2>
-<p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services version 2">JABAWS<sup>2.0</sup>:Disorder</span> is  free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. Disorder prediction services are based on <a href="http://dis.embl.de/">DisEMBL</a>, <a href="http://iupred.enzim.hu">IUPred</a>, <a href="http://www.strubi.ox.ac.uk/RONN">Ronn</a>, <a href="http://globplot.embl.de/">GlobPlot</a>, conservation is calculated by <a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a>, multiple sequence alignment services are the <a href="http://www.clustal.org/omega">Clustal Omega</a>, <a href="http://www.clustal.org/clustal2">Clustal W</a>, <a href=
+<p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services">JABAWS</span> is  free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. JABAWS v2.0 includes new disorder prediction services based on <a href="http://dis.embl.de/">DisEMBL</a>, <a href="http://iupred.enzim.hu">IUPred</a>, <a href="http://www.strubi.ox.ac.uk/RONN">Ronn</a>, <a href="http://globplot.embl.de/">GlobPlot</a> and protein sequence alignment conservation measures calculated by <a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a>. A new multiple sequence alignment service for <a href="http://www.clustal.org/omega">Clustal Omega</a> is also provided, in addition to standard JABAWS:MSA services for <a href="http://www.clustal.org/clustal2">Clustal W</a>, <a href=
 "http://align.bmr.kyushu-u.ac.jp/mafft/software/">MAFFT</a>, <a href="http://www.drive5.com/muscle">MUSCLE</a>, <a href=
 "http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE</a> and <a href="http://probcons.stanford.edu/">PROBCONS</a>. 
-<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> multiple sequence alignment editor and analysis workbench  to allow multiple        alignment calculations limited only by your own local computing        resources.</span></p>
+<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> desktop application and provide multiple alignment and sequence analysis calculations limited only by your own local computing resources.</span></p>
 
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