X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Findex.html;h=20fc40fee310a1309297cdde54c5d5208a54c92b;hb=a2cffcf92327725d8fc8abfd49d032176be4e86a;hp=52826d912173c1e8e8d1fb802b1844f2110a618d;hpb=a0fab8b5a5e691130d39e4075bbaf70c957891e3;p=jabaws.git diff --git a/website/index.html b/website/index.html index 52826d9..20fc40f 100644 --- a/website/index.html +++ b/website/index.html @@ -18,9 +18,9 @@ page
@@ -32,16 +32,17 @@ page Getting Started Manual Download + Usage Statistics + Services Status Contact Us - Usage stats Barton Group

JABAWS 2

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JABAWS:MSA is free software which provides five web services for multiple sequence alignment: Clustal W, JABAWS2.0:Disorder is free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. Disorder prediction services are based on DisEMBL, IUPred, Ronn, GlobPlot, conservation is calculated by AACon, multiple sequence alignment services are the Clustal Omega, Clustal W, MAFFT, MUSCLE, TCOFFEE and PROBCONS conveniently packaged to run on your local computer, server or cluster. +"http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE and PROBCONS. JABA Web Services can be accessed from the Jalview multiple sequence alignment editor and analysis workbench to allow multiple alignment calculations limited only by your own local computing resources.

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For Users

The Server: JABAWS Virtual Appliance: (520M) -
+ or use JABAWS on Amazon Webservices Cloud
The Client: Jalview (18M) -

To use JABA Web Services on most operating systems, just download and install the JABAWS Virtual Appliance (VA) and point Jalview at it.

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To use JABA Web Services on most operating systems, just download and install the JABAWS Virtual Appliance (VA) or even easier - just start JABAWS machine on the cloud and point Jalview at it!

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For System Administrators

The Server: JABAWS Web Application aRchive (45M)

+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive (55M)

JABAWS requires a Servlet 2.4 compatible servlet container like Apache-Tomcat to run. Please check the quick start guide for installation instructions.

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For Bioinformaticians/Developers

The Server: JABAWS Web Application aRchive (45M) +"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive (55M)
The Client: - Command Line Client binary | source + Command Line Client binary | source @@ -98,16 +99,16 @@ Check out the quick start guide for furt title="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?" rel= "nofollow">WSDL List -

The maximum number of sequences you can align with this public web service is 1000 with up to 1000 letters average length. Should you find this to be insufficient for your needs, or if you are concerned about privacy or on an unreliable network connection, then you can download and run the JABAWS Server on your own hardware.

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These web services will reject submissions containing more then one thousand sequences. Should you find this to be insufficient for your needs, or if you are concerned about privacy or on an unreliable network connection, then you can download and run the JABAWS Server on your own hardware.

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Publication

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Reference

Peter V. Troshin, James B. Procter and Geoffrey J. Barton - "Java Bioinformatics Analysis Web Services for Multiple Sequence Alignment - JABAWS:MSA" Bioinformatics 2011; doi: 10.1093/bioinformatics/btr304.

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