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@@ -105,12 +102,14 @@
JABAWS currently provides access to the following programs:
Multiple Sequence Alignement
Protein Secondary structure prediction
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- RNAalifold from ViennaRNA (2.0)
-All these codes including Jronn and AAcon are available at the
Download section (registration is required).
+All these codes including Jronn and AAcon are available at the
Download
+section (registration is required).
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What is new in JABAWS 2.1?
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JABAWS Version 2.1 (Released 1st Oct 2013)JABAWS 2.1 includes several bug fixes and minor updates for JABAWS Version 2.0. These are listed below:
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+
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What is new in JABAWS 2.1?
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JABAWS Version 2.1 (Released 1st Oct 2013)
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Several new web services are available in this version of JABAWS:
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+ - Two multiple sequence aligners: MSAprobs and GLprobs. Both services return the standard Alignment object
+ - RNAalifoldWS returns RNAStructScoreManager which is the standard ScoreManager objects with several additional methods.
+ -
+ JpredWS returns the JpredAligment object which is the standard Alignment with additional methods for extracting
+ Jpred predictions. These predictions are supplied as additional sequences in the aligment.
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Some bugs have been fixed and several improvements have been done:
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+ - WS status servlet returns version and some additional information on each web service
+ - a bug with path to help in the client
+ - Fix two bug with the Google Analytics library: no-stop due to running thread
+ - GoogleAnalytics gets proper JABAWS version
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+
+
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JABAWS Version 2.0.1 (Released 2nd Jul 2013)JABAWS 2.0.1 includes several bug fixes and minor updates for JABAWS Version 2.0. These are listed below:
- Disembl returned swapped strings for HOTLOOPS and REM465
- Jronn failed to process jobs with more than 3 sequences
- - JABAWS could not deal with FASTA records with '>' symbols in the record identificator
+ - JABAWS could not deal with FASTA records with '>' symbols in the record identificator
- Change of parameter description for AAcon: parameters have been replaced with options for calculation methods. This allows a user to get several AAcon's conservation scores
in one call
- JABAWS never cleaned up job directories. Now JABAWS deletes the job directory if it exist longer then a period defined in Engine.properties
