X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fv_2_1_0%2Fman_dev.html;h=bee244336f001f2e2bf2f59cb023386f5e111e0f;hb=234dc373ab3f4f964ea751b35753f6f8149d0e56;hp=01a60e8f8d1857d272da3bafa51c25b811a70bfe;hpb=b36a3b7ec7d88d9f78bbe1a5794e2bf638540292;p=jabaws.git diff --git a/website/v_2_1_0/man_dev.html b/website/v_2_1_0/man_dev.html index 01a60e8..bee2443 100644 --- a/website/v_2_1_0/man_dev.html +++ b/website/v_2_1_0/man_dev.html @@ -17,9 +17,9 @@ @@ -80,7 +80,7 @@ Limit limit = getLimit(String name)
LimitsManager lm = getLimits()
PresetManager pm = getPresets()

-

Please refer to a data model javadoc for a detailed description of each methods.

+

Please refer to a data model javadoc for a detailed description of each methods.

Structure of the template command line client

@@ -105,7 +105,7 @@

Additional utility libraries that this client depend upon is the compbio-util-1.3.jar and compbio-annotation-1.0.jar.
- Please refer to a data model javadoc for a detailed description of each class and its methods.

+ Please refer to a data model javadoc for a detailed description of each class and its methods.

Connecting to JABAWS

@@ -156,7 +156,7 @@ web service deployed in the University of Dundee.

Where Services is enumeration of JABAWS web services. All JABAWS multiple sequence alignment methods confirm to MsaWS specification, thus from the caller point of view all JABAWS web services can be represented by MsaWS - interface. The full documentation of MsaWS functions is available from the javadoc. + interface. The full documentation of MsaWS functions is available from the javadoc.

@@ -255,7 +255,7 @@ calculation has been completed before accessing the results. You can do it like The names of all the parameters supported by a web service e.g. "PAM300" can be obtained using options.getArguments() method. Further details on the methods available from RunnerConfig object are available from the - javadoc.

+ javadoc.

Writing alignments to a file

There is a utility method in the client library that does exactly that.

Alignment alignment = align(...)
@@ -401,7 +401,7 @@ public class Example { } } -For a more detailed description of all available types and their functions please refer to the data model javadoc. +For a more detailed description of all available types and their functions please refer to the data model javadoc.

Building web services artifacts

JABAWS are the standard JAX-WS SOAP web services, which are WS-I