JAL-1645 licencing for new files in src
authorJim Procter <jprocter@issues.jalview.org>
Thu, 10 Sep 2015 09:34:38 +0000 (10:34 +0100)
committerJim Procter <jprocter@issues.jalview.org>
Thu, 10 Sep 2015 10:06:03 +0000 (11:06 +0100)
commitdb4eacee27b836db4126dca551887bfc6652d72a
tree8555b79f5ae3ae61a7ef4b9999ac8bd36fa3e973
parent52288466dd1e71946a06fd1e6ea15fa8e652c693
JAL-1645 licencing for new files in src
77 files changed:
src/jalview/analysis/AlignmentAnnotationUtils.java
src/jalview/analysis/AnnotationSorter.java
src/jalview/analysis/CodingUtils.java
src/jalview/analysis/CodonComparator.java
src/jalview/analysis/scoremodels/FeatureScoreModel.java
src/jalview/api/BuildDetailsI.java
src/jalview/api/ComplexAlignFile.java
src/jalview/api/FeatureSettingsControllerI.java
src/jalview/api/FeatureSettingsModelI.java
src/jalview/api/FeaturesDisplayedI.java
src/jalview/api/SplitContainerI.java
src/jalview/api/ViewStyleI.java
src/jalview/api/analysis/ViewBasedAnalysisI.java
src/jalview/appletgui/AnnotationColumnChooser.java
src/jalview/appletgui/AnnotationRowFilter.java
src/jalview/appletgui/SplitFrame.java
src/jalview/appletgui/TitledPanel.java
src/jalview/bin/BuildDetails.java
src/jalview/controller/FeatureSettingsController.java
src/jalview/controller/FeatureSettingsControllerGuiI.java
src/jalview/datamodel/ASequence.java
src/jalview/datamodel/ASequenceI.java
src/jalview/datamodel/AlignedCodon.java
src/jalview/datamodel/AlignmentExportData.java
src/jalview/datamodel/IncompleteCodonException.java
src/jalview/datamodel/RnaViewerModel.java
src/jalview/datamodel/SequenceDummy.java
src/jalview/datamodel/StructureViewerModel.java
src/jalview/exceptions/JalviewException.java
src/jalview/exceptions/NoFileSelectedException.java
src/jalview/ext/rbvi/chimera/ChimeraListener.java
src/jalview/ext/varna/RnaModel.java
src/jalview/gui/AlignExportSettings.java
src/jalview/gui/AnnotationChooser.java
src/jalview/gui/AnnotationRowFilter.java
src/jalview/gui/HTMLOptions.java
src/jalview/gui/Help.java
src/jalview/gui/JalviewChimeraBindingModel.java
src/jalview/gui/ProgressBar.java
src/jalview/gui/SplitFrame.java
src/jalview/gui/StructureViewerBase.java
src/jalview/httpserver/AbstractRequestHandler.java
src/jalview/httpserver/HttpServer.java
src/jalview/io/BioJsHTMLOutput.java
src/jalview/io/Gff3File.java
src/jalview/io/HtmlSvgOutput.java
src/jalview/io/PhylipFile.java
src/jalview/jbgui/GAlignExportSettings.java
src/jalview/jbgui/GSplitFrame.java
src/jalview/jbgui/PDBDocFieldPreferences.java
src/jalview/json/binding/biojs/BioJSReleasePojo.java
src/jalview/json/binding/biojs/BioJSRepositoryPojo.java
src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java
src/jalview/json/binding/biojson/v1/AlignmentPojo.java
src/jalview/json/binding/biojson/v1/AnnotationPojo.java
src/jalview/json/binding/biojson/v1/JalviewBioJsColorSchemeMapper.java
src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
src/jalview/json/binding/biojson/v1/SequencePojo.java
src/jalview/math/AlignmentDimension.java
src/jalview/renderer/seqfeatures/FeatureRenderer.java
src/jalview/rest/RestHandler.java
src/jalview/structure/AtomSpec.java
src/jalview/structure/CommandListener.java
src/jalview/structures/models/AAStructureBindingModel.java
src/jalview/util/MappingUtils.java
src/jalview/util/ReverseListIterator.java
src/jalview/util/StringUtils.java
src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java
src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java
src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java
src/jalview/viewmodel/styles/ViewStyle.java
src/jalview/workers/ComplementConsensusThread.java
src/jalview/ws/dbsources/PDBRestClient.java
src/jalview/ws/jws2/AbstractJabaCalcWorker.java