JAL-2629 choice of hmm profile now a parameter not a selection, apis simplified
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 17 Apr 2018 17:38:54 +0000 (18:38 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 17 Apr 2018 17:38:54 +0000 (18:38 +0100)
commit5e22c6b15dc429055036c19fcfc48c16d37d7ad0
tree81ad14024b62a188f97e8aa87880417e14e15b18
parent37f0332f53a8564ba7a9d55b993f8bfd2f368c80
JAL-2629 choice of hmm profile now a parameter not a selection, apis simplified
24 files changed:
resources/lang/Messages.properties
resources/lang/Messages_es.properties
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/SequenceCollectionI.java
src/jalview/datamodel/SequenceGroup.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/OptsAndParamsPage.java
src/jalview/gui/PopupMenu.java
src/jalview/hmmer/HMMAlign.java
src/jalview/hmmer/HMMBuild.java
src/jalview/hmmer/HMMERParamStore.java
src/jalview/hmmer/HMMSearch.java
src/jalview/hmmer/HmmerCommand.java
src/jalview/io/FileLoader.java
src/jalview/jbgui/GPreferences.java
src/jalview/schemes/HmmerColourScheme.java
src/jalview/schemes/HmmerGlobalBackground.java
src/jalview/schemes/HmmerLocalBackground.java
src/jalview/workers/InformationThread.java
src/jalview/ws/params/simple/LogarithmicParameter.java
test/jalview/hmmer/HMMERTest.java
test/jalview/schemes/HmmerGlobalBackgroundTest.java
test/jalview/schemes/HmmerLocalBackgroundTest.java
utils/i18nAnt.xml