JAL-4386 Calculate tree using secondary structure annotation
authorRenia Correya <reniacorreya@users.noreply.github.com>
Fri, 8 Mar 2024 09:16:44 +0000 (09:16 +0000)
committerRenia Correya <reniacorreya@users.noreply.github.com>
Fri, 8 Mar 2024 09:16:44 +0000 (09:16 +0000)
commit77d73c1194625fe12c6e3f3431b37459e5592d8a
tree38dbb7ec2b19356eb7fc4871bff55386629b2552
parentc4d23061be96300cc0af4c25d8628665a9c2a155
JAL-4386 Calculate tree using secondary structure annotation
src/jalview/analysis/scoremodels/FeatureDistanceModel.java
src/jalview/analysis/scoremodels/PIDModel.java
src/jalview/analysis/scoremodels/ScoreMatrix.java
src/jalview/analysis/scoremodels/ScoreModels.java
src/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.java [new file with mode: 0644]
src/jalview/analysis/scoremodels/SmithWatermanModel.java
src/jalview/api/analysis/ScoreModelI.java
test/jalview/analysis/scoremodels/SecondaryStructureDistanceModelTest.java [new file with mode: 0644]