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(parent: c7dcce8) | patch
JWS-67 insert Jpred 3.0.1 sources into JABAWS
authorSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Thu, 1 Aug 2013 15:39:00 +0000 (16:39 +0100)
committerSasha Sherstnev <a.sherstnev@dundee.ac.uk>
Thu, 1 Aug 2013 15:39:00 +0000 (16:39 +0100)
commitb661d9cb9ef6885d4901b71ff9765bf22f8d1b46
tree01c8e6c2477d7f9fbf1251b178e3f492f6b6e50ftree | snapshot
parentc7dcce81d1d7d2a42e70125dbc095067e3298928commit | diff
JWS-67 insert Jpred 3.0.1 sources into JABAWS
86 files changed:
binaries/src/jpred/data/blast/BLOSUM45 [new file with mode: 0755] blob
binaries/src/jpred/data/blast/BLOSUM62 [new file with mode: 0755] blob
binaries/src/jpred/data/blast/BLOSUM80 [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSat.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSchoth.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSgc.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KShopp.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSkyte.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSpcc.mat [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSpur.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/KSpyr.flt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/PAM30 [new file with mode: 0755] blob
binaries/src/jpred/data/blast/PAM70 [new file with mode: 0755] blob
binaries/src/jpred/data/blast/asn2ff.prt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/bstdt.val [new file with mode: 0755] blob
binaries/src/jpred/data/blast/featdef.val [new file with mode: 0755] blob
binaries/src/jpred/data/blast/gc.val [new file with mode: 0755] blob
binaries/src/jpred/data/blast/humrep.fsa [new file with mode: 0755] blob
binaries/src/jpred/data/blast/lineages.txt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/makerpt.prt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/objprt.prt [new file with mode: 0755] blob
binaries/src/jpred/data/blast/pubkey.enc [new file with mode: 0755] blob
binaries/src/jpred/data/blast/seqcode.val [new file with mode: 0755] blob
binaries/src/jpred/data/blast/sequin.hlp [new file with mode: 0755] blob
binaries/src/jpred/data/blast/sgmlbb.ent [new file with mode: 0755] blob
binaries/src/jpred/data/blast/taxlist.txt [new file with mode: 0755] blob
binaries/src/jpred/data/coils/new.mat [new file with mode: 0755] blob
binaries/src/jpred/i686/blastpgp [new file with mode: 0755] blob
binaries/src/jpred/i686/fastacmd [new file with mode: 0755] blob
binaries/src/jpred/i686/hmmbuild [new file with mode: 0755] blob
binaries/src/jpred/i686/hmmconvert [new file with mode: 0755] blob
binaries/src/jpred/i686/jnet [new file with mode: 0755] blob
binaries/src/jpred/i686/oc [new file with mode: 0755] blob
binaries/src/jpred/i686/pairwise [new file with mode: 0755] blob
binaries/src/jpred/jpred.pl [new file with mode: 0755] blob
binaries/src/jpred/lib/BLC.pm [new file with mode: 0755] blob
binaries/src/jpred/lib/Common.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Concise.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Concise/File.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/DSSP.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/DSSP/SCOP.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/FASTA.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/FASTA/File.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Filelist.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/HMMER/Profile.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/HMMER/Profile/Jnet.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/HPM.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/IO/String.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Index.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Index/EMBOSS.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Index/FastaCMD.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Jpred.pm [new file with mode: 0755] blob
binaries/src/jpred/lib/OC.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/PSIBLAST.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/PSIBLAST/PSSM.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/PSIBLAST/PSSM/Jnet.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/PSIBLAST/Run.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Pairwise.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Paths.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Profile.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Profile/Generic.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Profile/Jnet.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Profile/Scanps.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Profile/Scanps/Result.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Quality.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Read.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Root.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Run.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/SOV.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Sequence.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Sequence/File.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Utils.pm [new file with mode: 0644] blob
binaries/src/jpred/lib/Write.pm [new file with mode: 0644] blob
binaries/src/jpred/tests/.platform [new file with mode: 0644] blob
binaries/src/jpred/tests/SCOP175B_nr.fas [new file with mode: 0644] blob
binaries/src/jpred/tests/T-state1.fas [new file with mode: 0644] blob
binaries/src/jpred/tests/T-state2.fas [new file with mode: 0644] blob
binaries/src/jpred/tests/d16vpa_.fas [new file with mode: 0644] blob
binaries/src/jpred/tests/todo.bash [new file with mode: 0755] blob
binaries/src/jpred/x86_64/blastpgp [new file with mode: 0755] blob
binaries/src/jpred/x86_64/fastacmd [new file with mode: 0755] blob
binaries/src/jpred/x86_64/hmmbuild [new file with mode: 0755] blob
binaries/src/jpred/x86_64/hmmconvert [new file with mode: 0755] blob
binaries/src/jpred/x86_64/jnet [new file with mode: 0755] blob
binaries/src/jpred/x86_64/oc [new file with mode: 0755] blob
binaries/src/jpred/x86_64/pairwise [new file with mode: 0755] blob