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Create Instance of FormatAdapter
author
amwaterhouse
<Andrew Waterhouse>
Thu, 22 Sep 2005 15:53:18 +0000
(15:53 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Thu, 22 Sep 2005 15:53:18 +0000
(15:53 +0000)
src/jalview/ws/JPredClient.java
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diff --git
a/src/jalview/ws/JPredClient.java
b/src/jalview/ws/JPredClient.java
index
45e331a
..
8f94e97
100755
(executable)
--- a/
src/jalview/ws/JPredClient.java
+++ b/
src/jalview/ws/JPredClient.java
@@
-26,6
+26,7
@@
import ext.vamsas.*;
import jalview.analysis.*;
\r
import jalview.datamodel.*;
\r
import jalview.gui.*;
\r
import jalview.analysis.*;
\r
import jalview.datamodel.*;
\r
import jalview.gui.*;
\r
+import jalview.io.FormatAdapter;
\r
\r
public class JPredClient
\r
extends WSClient
\r
\r
public class JPredClient
\r
extends WSClient
\r
@@
-400,7
+401,7
@@
public class JPredClient
\r
if (jalview.io.FormatAdapter.formats.contains(format))
\r
{
\r
\r
if (jalview.io.FormatAdapter.formats.contains(format))
\r
{
\r
- al = new Alignment(jalview.io.FormatAdapter.readFile(
\r
+ al = new Alignment(new FormatAdapter().readFile(
\r
result.getAligfile(), "Paste", format));
\r
for (int i=0, j=al.getHeight(); i<j; i++) {
\r
SequenceI sq = al.getSequenceAt(i);
\r
result.getAligfile(), "Paste", format));
\r
for (int i=0, j=al.getHeight(); i<j; i++) {
\r
SequenceI sq = al.getSequenceAt(i);
\r