git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (parent:
b452ce8
)
JAL-3111 release notes for JAL-3334 JAL-3330 and rejig others
author
Jim Procter
<jprocter@issues.jalview.org>
Wed, 26 Jun 2019 17:07:41 +0000
(18:07 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Wed, 26 Jun 2019 17:07:41 +0000
(18:07 +0100)
help/help/html/releases.html
patch
|
blob
|
history
diff --git
a/help/help/html/releases.html
b/help/help/html/releases.html
index
b9b1b67
..
9b71968
100755
(executable)
--- a/
help/help/html/releases.html
+++ b/
help/help/html/releases.html
@@
-57,7
+57,7
@@
li:before {
</tr>
<tr>
<td width="60" align="center" nowrap>
</tr>
<tr>
<td width="60" align="center" nowrap>
- <strong><a name="Jalview.2.11">2.11</a><br />
+ <strong><a name="Jalview.2.11.0">2.11.0</a><br />
<em>27/06/2019</em></strong>
</td>
<td align="left" valign="top">
<em>27/06/2019</em></strong>
</td>
<td align="left" valign="top">
@@
-98,7
+98,7
@@
li:before {
<ul>
<li>
<!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
<ul>
<li>
<!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
- implementation that alows updates) used for Sequence Feature collections</li>
+ implementation that allows updates) used for Sequence Feature collections</li>
<li>
<li>
<!-- JAL-2808,JAL-2069 -->Sequence features can be filtered and
<li>
<li>
<!-- JAL-2808,JAL-2069 -->Sequence features can be filtered and
@@
-107,6
+107,10
@@
li:before {
column 9 of GFF file)
</li>
<li>
column 9 of GFF file)
</li>
<li>
+ <!-- JAL-3334 -->Use full Sequence Ontology (via BioJava) to
+ recognise variant features
+ </li>
+ <li>
<!-- JAL-2897 -->Show synonymous codon variants on peptide
sequences
</li>
<!-- JAL-2897 -->Show synonymous codon variants on peptide
sequences
</li>
@@
-325,6
+329,15
@@
li:before {
score from view
</li>
<li>
score from view
</li>
<li>
+ <!-- JAL-3330 -->Sequence Variants retrieved from Ensembl during
+ show cross references or Fetch Database References are shown in
+ red in original view
+ </li>
+ <li>
+ <!-- JAL-2898 -->stop_gained variants not shown correctly on
+ peptide sequence
+ </li>
+ <li>
<!-- JAL-2060 -->'Graduated colour' option not offered for
manually created features (where if feature score is Float.NaN)
</li>
<!-- JAL-2060 -->'Graduated colour' option not offered for
manually created features (where if feature score is Float.NaN)
</li>
@@
-409,10
+422,6
@@
li:before {
shown in complementary view
</li>
<li>
shown in complementary view
</li>
<li>
- <!-- JAL-2898 -->stop_gained variants not shown correctly on
- peptide sequence
- </li>
- <li>
<!-- JAL-3313 -->Codon consensus incorrectly scaled when shown
without normalisation
</li>
<!-- JAL-3313 -->Codon consensus incorrectly scaled when shown
without normalisation
</li>