git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (parent:
336e0c5
)
optional sequencegroup ref for annotation row
author
jprocter
<Jim Procter>
Fri, 24 Jul 2009 15:07:35 +0000
(15:07 +0000)
committer
jprocter
<Jim Procter>
Fri, 24 Jul 2009 15:07:35 +0000
(15:07 +0000)
src/jalview/datamodel/AlignmentAnnotation.java
patch
|
blob
|
history
diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
adc25c2
..
4f7fd93
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-101,6
+101,18
@@
public class AlignmentAnnotation
public boolean belowAlignment = true;
public boolean belowAlignment = true;
+ public SequenceGroup groupRef =null ;
+
+
+ /* (non-Javadoc)
+ * @see java.lang.Object#finalize()
+ */
+ protected void finalize() throws Throwable
+ {
+ groupRef = null;
+ super.finalize();
+ }
+
public static int getGraphValueFromString(String string)
{
if (string.equalsIgnoreCase("BAR_GRAPH"))
public static int getGraphValueFromString(String string)
{
if (string.equalsIgnoreCase("BAR_GRAPH"))
@@
-319,6
+331,7
@@
public class AlignmentAnnotation
this.graph = annotation.graph;
this.graphHeight = annotation.graphHeight;
this.graphGroup = annotation.graphGroup;
this.graph = annotation.graph;
this.graphHeight = annotation.graphHeight;
this.graphGroup = annotation.graphGroup;
+ this.groupRef = annotation.groupRef;
this.editable = annotation.editable;
this.autoCalculated = annotation.autoCalculated;
this.hasIcons = annotation.hasIcons;
this.editable = annotation.editable;
this.autoCalculated = annotation.autoCalculated;
this.hasIcons = annotation.hasIcons;