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No need to sened sequence to determine residue colour
author
amwaterhouse
<Andrew Waterhouse>
Wed, 15 Dec 2004 17:27:31 +0000
(17:27 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 15 Dec 2004 17:27:31 +0000
(17:27 +0000)
src/jalview/schemes/ConservationColourScheme.java
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diff --git
a/src/jalview/schemes/ConservationColourScheme.java
b/src/jalview/schemes/ConservationColourScheme.java
index
7acc722
..
ab5a808
100755
(executable)
--- a/
src/jalview/schemes/ConservationColourScheme.java
+++ b/
src/jalview/schemes/ConservationColourScheme.java
@@
-67,7
+67,7
@@
public class ConservationColourScheme extends ResidueColourScheme {
\r
seq.setColor(c);
\r
}
\r
\r
seq.setColor(c);
\r
}
\r
- public Color findColour(SequenceI seq, String s, int i, java.util.Vector whatever)
\r
+ public Color findColour(String s, int i, java.util.Vector whatever)
\r
{
\r
Color c = null;
\r
if (colourThreshold > 0 && conserve.getConsSequence() != null)
\r
{
\r
Color c = null;
\r
if (colourThreshold > 0 && conserve.getConsSequence() != null)
\r
@@
-105,7
+105,7
@@
public class ConservationColourScheme extends ResidueColourScheme {
}
\r
\r
public Color findColour(DrawableSequence seq, String s, int j) {
\r
}
\r
\r
public Color findColour(DrawableSequence seq, String s, int j) {
\r
- return cs.findColour(null, s, -1, null);
\r
+ return cs.findColour( s, -1, null);
\r
}
\r
public boolean fullConservation(int j) {
\r
String tmp = conserve.getConsSequence().getSequence().substring(j,j+1);
\r
}
\r
public boolean fullConservation(int j) {
\r
String tmp = conserve.getConsSequence().getSequence().substring(j,j+1);
\r