omitHidden = ap.av.getViewAsString(true);
Alignment oal = new Alignment(ap.av.getSequenceSelection());
AlignmentAnnotation[] nala = ap.av.alignment.getAlignmentAnnotation();
omitHidden = ap.av.getViewAsString(true);
Alignment oal = new Alignment(ap.av.getSequenceSelection());
AlignmentAnnotation[] nala = ap.av.alignment.getAlignmentAnnotation();
}
cap.setText(new FormatAdapter().formatSequences(e.getActionCommand(),
oal, omitHidden, csel, sg));
}
cap.setText(new FormatAdapter().formatSequences(e.getActionCommand(),
oal, omitHidden, csel, sg));