-<p><em>Sort by</em> - When the alignment is loaded in, it will can
-be sorted by Id or pairwise identity.</p>
+<p><em>Sort alignment by</em> - When the alignment is loaded in, it can
+be ordered as read (No sort), or sorted by Id or pairwise identity.</p>
+<p><em>Sort annotations by</em> - Annotations can be unsorted, sorted by the order of the related sequences in
+the alignment, or by label. Autocalculated annotations (e.g. Consensus) can be shown either last (below sequence
+annotations) or first (above sequence annotations). <em>Since Jalview 2.8.2.</em></p>