- // set up values in case the alignment is wrapped
- /*int verticalOffset = 0;
- int horizontalOffset = 0;
- if (av.getWrapAlignment())
- {
- int hgap = charHeight;
- if (av.getScaleAboveWrapped())
- {
- hgap += charHeight;
- }
-
- // get the start res of the group and work out the offsets for it in the wrapped alignment
- int groupstart = group.getStartRes();
- int cWidth = (getWidth() - LABEL_EAST - LABEL_WEST) / charWidth;
-
- // group is in which slice of alignment? res position / width in residues
- int slice = groupstart / cWidth;
- // vertical offset is increased by slice number * number of sequences * height of each sequence
- verticalOffset = slice * (av.getAlignment().getHeight() * charHeight
- + getAnnotationHeight() + hgap) + hgap;
-
- // horizontal offset is number of residues to subtract from group residue
- // position
- horizontalOffset = (slice * cWidth);
- }*/
-