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JAL-2154 toString for forward references
author
Jim Procter
<jprocter@issues.jalview.org>
Wed, 27 Jul 2016 16:41:59 +0000
(17:41 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Wed, 27 Jul 2016 16:41:59 +0000
(17:41 +0100)
src/jalview/gui/Jalview2XML.java
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diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
0f15505
..
3bf73df
100644
(file)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-278,9
+278,12
@@
public class Jalview2XML
{
String sref;
{
String sref;
- public SeqFref(String _sref)
+ String type;
+
+ public SeqFref(String _sref, String type)
{
sref = _sref;
{
sref = _sref;
+ this.type = type;
}
public String getSref()
}
public String getSref()
@@
-314,6
+317,12
@@
public class Jalview2XML
* @return true if the forward reference was fully resolved
*/
abstract boolean resolve();
* @return true if the forward reference was fully resolved
*/
abstract boolean resolve();
+
+ @Override
+ public String toString()
+ {
+ return type + " reference to " + sref;
+ }
}
/**
}
/**
@@
-326,7
+335,7
@@
public class Jalview2XML
public SeqFref newMappingRef(final String sref,
final jalview.datamodel.Mapping _jmap)
{
public SeqFref newMappingRef(final String sref,
final jalview.datamodel.Mapping _jmap)
{
- SeqFref fref = new SeqFref(sref)
+ SeqFref fref = new SeqFref(sref, "Mapping")
{
public jalview.datamodel.Mapping jmap = _jmap;
{
public jalview.datamodel.Mapping jmap = _jmap;
@@
-349,7
+358,7
@@
public class Jalview2XML
final AlignedCodonFrame _cf, final jalview.datamodel.Mapping _jmap)
{
final AlignedCodonFrame _cf, final jalview.datamodel.Mapping _jmap)
{
- SeqFref fref = new SeqFref(sref)
+ SeqFref fref = new SeqFref(sref, "Codon Frame")
{
AlignedCodonFrame cf = _cf;
{
AlignedCodonFrame cf = _cf;