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individual label format settings for each annotation row. Removed excess term in...
author
jprocter
<Jim Procter>
Thu, 11 Mar 2010 17:04:40 +0000
(17:04 +0000)
committer
jprocter
<Jim Procter>
Thu, 11 Mar 2010 17:04:40 +0000
(17:04 +0000)
src/jalview/datamodel/AlignmentAnnotation.java
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diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
81e9afe
..
d8ad4fc
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-103,6
+103,21
@@
public class AlignmentAnnotation
public SequenceGroup groupRef =null ;
public SequenceGroup groupRef =null ;
+ /**
+ * display every column label, even if there is a row of identical labels
+ */
+ public boolean showAllColLabels=false;
+
+ /**
+ * scale the column label to fit within the alignment column.
+ */
+ public boolean scaleColLabel = false;
+
+ /**
+ * centre the column labels relative to the alignment column
+ */
+ public boolean centreColLabels = false;
+
/* (non-Javadoc)
* @see java.lang.Object#finalize()
/* (non-Javadoc)
* @see java.lang.Object#finalize()
@@
-186,7
+201,6
@@
public class AlignmentAnnotation
firstChar != 'H'
&& firstChar != 'E'
&& firstChar != '-'
firstChar != 'H'
&& firstChar != 'E'
&& firstChar != '-'
- && firstChar != '-'
&& firstChar < jalview.schemes.ResidueProperties.aaIndex.length)
{
if (jalview.schemes.ResidueProperties.aaIndex[firstChar] < 23)
&& firstChar < jalview.schemes.ResidueProperties.aaIndex.length)
{
if (jalview.schemes.ResidueProperties.aaIndex[firstChar] < 23)