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JAL-2350 update uniprot test - fails due to ENA crosref having “0 (PROMOTED)” as...
patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency
author
Jim Procter
<j.procter@dundee.ac.uk>
Mon, 19 Dec 2022 10:33:49 +0000
(10:33 +0000)
committer
Jim Procter
<j.procter@dundee.ac.uk>
Mon, 19 Dec 2022 10:33:49 +0000
(10:33 +0000)
test/jalview/ws/dbsources/UniprotTest.java
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diff --git
a/test/jalview/ws/dbsources/UniprotTest.java
b/test/jalview/ws/dbsources/UniprotTest.java
index
a7eedf1
..
c551882
100644
(file)
--- a/
test/jalview/ws/dbsources/UniprotTest.java
+++ b/
test/jalview/ws/dbsources/UniprotTest.java
@@
-224,14
+224,18
@@
public class UniprotTest
res = DBRefUtils.searchRefsForSource(seq.getDBRefs(),
DBRefSource.UNIPROT);
assertEquals(2, res.size());
res = DBRefUtils.searchRefsForSource(seq.getDBRefs(),
DBRefSource.UNIPROT);
assertEquals(2, res.size());
- res = DBRefUtils.searchRefs(seq.getDBRefs(), "AAK85932");
- assertEquals(1, res.size());
- assertTrue("1".equals(res.get(0).getVersion()));
/*
* NB this test fragile - relies on ordering being preserved
*/
assertTrue(res.get(0).isCanonical());
assertFalse(res.get(1).isCanonical());
/*
* NB this test fragile - relies on ordering being preserved
*/
assertTrue(res.get(0).isCanonical());
assertFalse(res.get(1).isCanonical());
+ /*
+ * check crossrefs
+ */
+ res = DBRefUtils.searchRefs(seq.getDBRefs(), "AAK85932");
+ assertEquals(1, res.size());
+ assertTrue("1".equals(res.get(0).getVersion()));
+
}
/**
}
/**