OutputHeader = wsInfo.getProgressText();
alTitle = title;
dataset = seqset;
+
SequenceI[][] conmsa = _msa.getVisibleContigs('-');
if (conmsa != null)
{
Vector alorders = new Vector();
SequenceI[][] results=new SequenceI[jobs.length][];
AlignmentOrder[] orders = new AlignmentOrder[jobs.length];
- SequenceI[] first=null;
+
for (int j=0; j<jobs.length; j++) {
if (jobs[j].hasResults()) {
Object[] res = ( (MsaWSJob) jobs[j]).getAlignment();
{
String orderName = new String(" Region " + i);
int j = i + 1;
- int r = l;
+
while (j < l)
{
if ( ( (AlignmentOrder) alorders.get(i)).equals( ( (
{
return false;
}
-}
\ No newline at end of file
+}