JAL-4420 Add some debugging statements

diff --git a/getdown/lib/getdown-core.jar b/getdown/lib/getdown-core.jar
index e2a2999..ee0eb50 100644 (file)
Binary files a/getdown/lib/getdown-core.jar and b/getdown/lib/getdown-core.jar differ

diff --git a/getdown/lib/getdown-launcher-local.jar b/getdown/lib/getdown-launcher-local.jar
index 811a488..1d9e388 100644 (file)
Binary files a/getdown/lib/getdown-launcher-local.jar and b/getdown/lib/getdown-launcher-local.jar differ

diff --git a/getdown/lib/getdown-launcher.jar b/getdown/lib/getdown-launcher.jar
index f9ce011..a2c6470 100644 (file)
Binary files a/getdown/lib/getdown-launcher.jar and b/getdown/lib/getdown-launcher.jar differ

diff --git a/j11lib/getdown-core.jar b/j11lib/getdown-core.jar
index e2a2999..ee0eb50 100644 (file)
Binary files a/j11lib/getdown-core.jar and b/j11lib/getdown-core.jar differ

diff --git a/j8lib/getdown-core.jar b/j8lib/getdown-core.jar
index e2a2999..ee0eb50 100644 (file)
Binary files a/j8lib/getdown-core.jar and b/j8lib/getdown-core.jar differ

diff --git a/src/jalview/bin/argparser/ArgParser.java b/src/jalview/bin/argparser/ArgParser.java
index bbcf831..e7cca35 100644 (file)
--- a/src/jalview/bin/argparser/ArgParser.java
+++ b/src/jalview/bin/argparser/ArgParser.java
@@ -320,9 +320,11 @@ public class ArgParser
     }
 
     // preprocess for associated files only if no actual --args supplied
+    Console.debug("Supplied args are " + args);
     if (!dd && !Cache.getDefault("NOARGPREPROCESSING", false))
     {
       ArgParserUtils.preProcessArgs(args);
+      Console.debug("Preprocessed args are " + args);
     }
 
     if (bsa != null)