\r
continue;\r
}\r
- else\r
- {\r
\r
- if(entry.getFeature()!=null)\r
+ if (entry.getFeature() != null)\r
+ {\r
+ Enumeration e = entry.getFeature().elements();\r
+ while (e.hasMoreElements())\r
{\r
- Enumeration e = entry.getFeature().elements();\r
- while (e.hasMoreElements())\r
- {\r
- SequenceFeature sf = (SequenceFeature) e.nextElement();\r
- sf.setBegin(sf.getBegin() + absStart + 1);\r
- sf.setEnd(sf.getEnd() + absStart + 1);\r
- }\r
+ SequenceFeature sf = (SequenceFeature) e.nextElement();\r
+ sf.setBegin(sf.getBegin() + absStart + 1);\r
+ sf.setEnd(sf.getEnd() + absStart + 1);\r
}\r
\r
sbuffer.append(sequence.getName() +\r
- " HAS "+absStart+" PREFIXED RESIDUES COMPARED TO UNIPROT - ANY SEQUENCE FEATURES"\r
- +" HAVE BEEN ADJUSTED ACCORDINGLY \n");\r
+ " HAS " + absStart +\r
+ " PREFIXED RESIDUES COMPARED TO UNIPROT - ANY SEQUENCE FEATURES"\r
+ + " HAVE BEEN ADJUSTED ACCORDINGLY \n");\r
absStart = 0;\r
}\r
\r
while(e.hasMoreElements())\r
{\r
PDBEntry pdb = (PDBEntry)e.nextElement();\r
- if(!pdb.getType().equals("PDB"))\r
+ if(!pdb.getType().equals(DBRefSource.PDB))\r
continue;\r
\r
sequence.addDBRef(new DBRefEntry(DBRefSource.PDB,\r