Count uniprot refs

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index 20ae27c..b4dd1f6 100755 (executable)
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -83,7 +83,8 @@ public class DasSequenceFeatureFetcher implements Runnable
       DasCoordinateSystem[] coords = source.getCoordinateSystem();\r
       for (int c = 0; c < coords.length; c++)\r
       {\r
-        if (coords[c].getName().equalsIgnoreCase("UniProt"))\r
+        System.out.println(coords[c].getName());\r
+        if (coords[c].getName().indexOf("UniProt")>-1)\r
         {\r
           uniprotCount++;\r
           break;\r
@@ -99,9 +100,10 @@ public class DasSequenceFeatureFetcher implements Runnable
       {\r
         for(int j=0; j<dbref.size(); j++)\r
         {\r
-          System.out.println(dbref.elementAt(j)\r
+          DBRefEntry entry = (DBRefEntry)dbref.elementAt(j);\r
+          System.out.println(entry.getSource()\r
                              +" "+jalview.datamodel.DBRefSource.UNIPROT);\r
-          if(dbref.elementAt(j)\r
+          if(entry.getSource()\r
              .equals(jalview.datamodel.DBRefSource.UNIPROT))\r
           {\r
             System.out.println("got a match");\r