updated BioJsTemplate.txt

diff --git a/resources/templates/BioJSTemplate.txt b/resources/templates/BioJSTemplate.txt
index d86fa65..af0e4d2 100644 (file)
--- a/resources/templates/BioJSTemplate.txt
+++ b/resources/templates/BioJSTemplate.txt
@@ -43,37 +43,7 @@ function toggleMenuVisibility(){
           divToggleButton.value="Hide Menu";
           }
 }
-function openJalviewUsingCurrentUrl2(){
-var jnpl = "<!--"+
-"Hi!"+
-"If you have downloaded this file after pressing \"Launch Full Application\" from Jalview on a web page and you don't know what to do with this file, you must install Java from http://www.java.sun.com then try opening this file again."+
-" \n"+
-"      JNLP generated by /jalviewServlet/services/launchAppDev"+
-"      JNLP generated from http://www.jalview.org/builds/develop/webstart/jalview.jnlp"+
-"Available servlet parameters (please URLEncode):"+
-"      open=<alignment file URL>"+
-"      jvm-max-heap=heap size in M or G"+
-"      features maps to        '-features'"+
-"      treeFile maps to        '-tree'"+
-"      tree maps to    '-tree'"+
-"      annotations maps to     '-annotations'"+
-"      colour maps to  '-colour'"+
-" "+
-"-->"+
-"<?xml version=\"1.0\" encoding=\"UTF-8\"?><jnlp spec=\"1.0+\" codebase=\"http://www.jalview.org/builds/develop/webstart\">    <information>           <title>Jalview</title>          <vendor>The Barton Group</vendor>               <homepage href=\"http://www.jalview.org\"/>             <description>Jalview Multiple Alignment Editor</description>            <description kind=\"short\">Jalview</description>               <icon href=\"JalviewLogo_big.png\"/>            <offline-allowed/>      </information>  <security>              <all-permissions/>      </security>     <resources>             <j2se version=\"1.7+\" initial-heap-size=\"10M\" max-heap-size=\"2G\"/>         <jar href=\"jalview.jar\"/>             <jar href=\"JGoogleAnalytics_0.3.jar\"/>                <jar href=\"Jmol-12.2.4.jar\"/>         <jar href=\"VARNAv3-91.jar\"/>          <jar href=\"activation.jar\"/>          <jar href=\"apache-mime4j-0.6.jar\"/>           <jar href=\"axis.jar\"/>                <jar href=\"castor-1.1-cycle-xml.jar\"/>                <jar href=\"commons-codec-1.3.jar\"/>           <jar href=\"commons-discovery.jar\"/>           <jar href=\"commons-logging-1.1.1.jar\"/>               <jar href=\"groovy-all-1.8.2.jar\"/>            <jar href=\"httpclient-4.0.3.jar\"/>            <jar href=\"httpcore-4.0.1.jar\"/>              <jar href=\"httpmime-4.0.3.jar\"/>              <jar href=\"jalview_jnlp_vm.jar\"/>             <jar href=\"jaxrpc.jar\"/>              <jar href=\"jdas-1.0.4.jar\"/>          <jar href=\"jhall.jar\"/>               <jar href=\"json_simple-1.1.jar\"/>             <jar href=\"jsoup-1.8.1.jar\"/>         <jar href=\"jswingreader-0.3.jar\"/>            <jar href=\"log4j-to-slf4j-2.0-rc2.jar\"/>              <jar href=\"mail.jar\"/>                <jar href=\"miglayout-4.0-swing.jar\"/>         <jar href=\"min-jabaws-client-2.1.0.jar\"/>             <jar href=\"regex.jar\"/>               <jar href=\"saaj.jar\"/>                <jar href=\"slf4j-api-1.7.7.jar\"/>             <jar href=\"slf4j-log4j12-1.7.7.jar\"/>         <jar href=\"spring-core-3.0.5.RELEASE.jar\"/>           <jar href=\"spring-web-3.0.5.RELEASE.jar\"/>            <jar href=\"vamsas-client.jar\"/>               <jar href=\"wsdl4j.jar\"/>              <jar href=\"xercesImpl.jar\"/>          <jar href=\"xml-apis.jar\"/>            <property name=\"jalview.version\" value=\"Development Branch Build\"/> </resources>"+
-"<application-desc main-class=\"jalview.bin.Jalview\">"+
-"<argument>-open</argument>"+
-"<argument>file:///Users/tcnofoegbu/Documents/workspace/java/dev/jalview/examples/example_biojs.html</argument>"+
-"</application-desc>"+
-"      <security>"+
-"              <all-permissions/>"+
-"      </security>"+
-"</jnlp>"
-
-var encodedUri = encodeURI(jnpl);
-window.open(encodedUri)
-//alert(jnpl)
-}
+
 
 function openJalviewUsingCurrentUrl(){
        var url = "http://webservices.compbio.dundee.ac.uk:38080/jalviewServlet/services/launchAppDev";
@@ -88,8 +58,7 @@ function openJalviewUsingCurrentUrl(){
     var myInput1 = document.createElement("input") ;
     myInput1.setAttribute("name", "open") ;
     myInput1.setAttribute("value", document.URL);
-    myForm.appendChild(myInput1) ;
-    
+    myForm.appendChild(myInput1) ;    
 
        document.body.appendChild(myForm) ;
        myForm.submit() ;