no longer used

diff --git a/src/jalview/schemes/ColourProperties.java b/src/jalview/schemes/ColourProperties.java
deleted file mode 100755 (executable)
index e243da7..0000000
--- a/src/jalview/schemes/ColourProperties.java
+++ /dev/null
@@ -1,144 +0,0 @@
-package jalview.schemes;\r
-\r
-import java.util.*;\r
-\r
-public class ColourProperties {\r
-\r
-  public static final int ZAPPO        = 0;\r
-  public static final int TAYLOR       = 1;\r
-  public static final int PID          = 2;\r
-  public static final int BLOSUM62     = 3;\r
-  public static final int SECONDARY    = 4;\r
-  public static final int USER         = 5;\r
-  public static final int HYDROPHOBIC  = 6;\r
-  public static final int CONSERVATION = 7;\r
-  public static final int HELIX        = 8;\r
-  public static final int STRAND       = 9;\r
-  public static final int TURN         = 10;\r
-  public static final int BURIED       = 11;\r
-  public static final int FEATURES     = 12;\r
-  public static final int CLUSTALX     = 13;\r
-\r
-  static ColourSchemePropertyVector colourSchemes = new ColourSchemePropertyVector();\r
-\r
-  static {\r
-    String prefix = getDefaultClassPrefix();\r
-\r
-    // MC 27/03/02 These should be read in from a file\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Zappo",\r
-                                              prefix + "ZappoColourScheme",\r
-                                              "Zappo colours"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Taylor",\r
-                                              prefix + "TaylorColourScheme",\r
-                                              "Taylor colours"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Hydrophobic",\r
-                                              prefix + "HydrophobicColourScheme",\r
-                                              "By Hydrophobicity"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Helix",\r
-                                              prefix + "HelixColourScheme",\r
-                                              "Helix propensity"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Strand",\r
-                                              prefix + "StrandColourScheme",\r
-                                              "Strand propensity"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Turn",\r
-                                              prefix + "TurnColourScheme",\r
-                                              "Turn propensity"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Buried",\r
-                                              prefix + "BuriedColourScheme",\r
-                                              "Buried index"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("BLOSUM62",\r
-                                            prefix + "Blosum62ColourScheme",\r
-                                            "By BLOSUM62 Score"));\r
-\r
-   colourSchemes.add(new ColourSchemeProperty("User defined",\r
-                                            prefix + "ZappoColourScheme",\r
-                                            "User defined colours"));\r
-\r
-       colourSchemes.add(new ColourSchemeProperty("PID",\r
-                                                  prefix + "PIDColourScheme",\r
-                                                  "By PID"));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Secondary structure",\r
-                                               prefix + "SecondaryColourScheme",\r
-                                               "By Secondary Structure"));\r
-\r
-   colourSchemes.add(new ColourSchemeProperty("Conservation",\r
-                                                   prefix + "ZappoColourScheme",\r
-                                                   null));\r
-\r
-      colourSchemes.add(new ColourSchemeProperty("Features",\r
-                                                   prefix + "FeatureColourScheme",\r
-                                                   null));\r
-\r
-    colourSchemes.add(new ColourSchemeProperty("Clustalx",\r
-                                               prefix + "ClustalXColourScheme",\r
-                                               "ClustalX colours"));\r
-  }\r
-\r
-  static int indexOf(String scheme) {\r
-    if (colourSchemes.contains(scheme)) {\r
-      return colourSchemes.indexOf(scheme);\r
-    } else {\r
-      return -1;\r
-    }\r
-  }\r
-\r
-  public static int indexOfClass(ColourSchemeI scheme) {\r
-    return colourSchemes.indexOfClass(scheme);\r
-  }\r
-\r
-  public static String getClassName(int index) {\r
-    return colourSchemes.getClassName(index);\r
-  }\r
-\r
-  public static String getMenuString(int index) {\r
-    return colourSchemes.getMenuString(index);\r
-  }\r
-\r
-  static boolean contains(String scheme) {\r
-    return colourSchemes.contains(scheme);\r
-  }\r
-\r
-  public static Vector getColourSchemeNames() {\r
-    return colourSchemes.getColourSchemeNames();\r
-  }\r
-\r
-  protected static String getDefaultClassPrefix() {\r
-    return "jalview.schemes.";\r
-  }\r
-\r
-  public static ColourSchemeI getColourScheme(int i)\r
-  {\r
-    switch(i)\r
-    {\r
-        case ColourProperties.HYDROPHOBIC: return new HydrophobicColourScheme();\r
-\r
-        case  ColourProperties.TAYLOR:   return new TaylorColourScheme();\r
-        case  ColourProperties.HELIX:    return new HelixColourScheme();\r
-        case  ColourProperties.STRAND:   return new StrandColourScheme();\r
-        case  ColourProperties.TURN:     return new TurnColourScheme();\r
-        case  ColourProperties.BURIED:   return new BuriedColourScheme();\r
-        case  ColourProperties.PID:      return new PIDColourScheme();\r
-        case  ColourProperties.BLOSUM62: return new Blosum62ColourScheme(null);\r
-\r
-        case  ColourProperties.ZAPPO:\r
-        case  ColourProperties.USER:\r
-        case  ColourProperties.CONSERVATION:\r
-        case  ColourProperties.FEATURES:\r
-        case  ColourProperties.CLUSTALX:\r
-       default: return new ZappoColourScheme();\r
-    }\r
-\r
-  }\r
-}\r
-\r
-\r
-\r

diff --git a/src/jalview/schemes/ColourSchemeFactory.java b/src/jalview/schemes/ColourSchemeFactory.java
deleted file mode 100755 (executable)
index 71c32c7..0000000
--- a/src/jalview/schemes/ColourSchemeFactory.java
+++ /dev/null
@@ -1,27 +0,0 @@
-package jalview.schemes;\r
-\r
-import java.lang.reflect.*;\r
-import java.util.*;\r
-\r
-public class ColourSchemeFactory {\r
-\r
-  public static ColourSchemeI get(int index) {\r
-    try {\r
-      String name = ColourProperties.getClassName(index);\r
-      Class c = Class.forName(name);\r
-\r
-      return (ColourSchemeI)c.newInstance();\r
-    } catch (Exception e) {\r
-      System.err.println(e);\r
-      return null;\r
-    }\r
-  }\r
-\r
-  public static ColourSchemeI get(String scheme) {\r
-    return get(ColourProperties.indexOf(scheme));\r
-  }\r
-\r
-  public static int get(ColourSchemeI cs) {\r
-    return ColourProperties.indexOfClass(cs);\r
-  }\r
-}\r