removed deprecated bits

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 061cf0d..de9da9f 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1512,8 +1512,8 @@ public void itemStateChanged(ItemEvent evt)
     frame.add(overview);\r
     // +50 must allow for applet frame window\r
     jalview.bin.JalviewLite.addFrame(frame, "Overview " + this.getTitle(),\r
-                                     overview.preferredSize().width,\r
-                                     overview.preferredSize().height + 50);\r
+                                     overview.getPreferredSize().width,\r
+                                     overview.getPreferredSize().height + 50);\r
 \r
     frame.pack();\r
     frame.addWindowListener(new WindowAdapter()\r
@@ -2420,7 +2420,7 @@ public void itemStateChanged(ItemEvent evt)
     viewport.applet.add(embeddedMenu, BorderLayout.NORTH);\r
     viewport.applet.add(statusBar, BorderLayout.SOUTH);\r
 \r
-    alignPanel.setSize(viewport.applet.size().width, viewport.applet.size().height\r
+    alignPanel.setSize(viewport.applet.getSize().width, viewport.applet.getSize().height\r
                        - embeddedMenu.HEIGHT - statusBar.HEIGHT);\r
 \r
      viewport.applet.add(alignPanel, BorderLayout.CENTER);\r

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index de9a4a7..35fc82f 100755 (executable)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -313,8 +313,8 @@ public class JalviewLite extends Applet
         {\r
           g.setColor(Color.black);\r
           g.setFont(new Font("Arial", Font.BOLD, 24));\r
-          g.drawString("Jalview Applet", 50, this.size().height/2 -30);\r
-          g.drawString("Loading Data...", 50, this.size().height/2);\r
+          g.drawString("Jalview Applet", 50, this.getSize().height/2 -30);\r
+          g.drawString("Loading Data...", 50, this.getSize().height/2);\r
         }\r
 \r
 \r