JAL-1486 todo for 2.8.2 release
authorJim Procter <jprocter@dundee.ac.uk>
Wed, 23 Apr 2014 16:15:04 +0000 (17:15 +0100)
committerJim Procter <jprocter@dundee.ac.uk>
Wed, 23 Apr 2014 16:15:04 +0000 (17:15 +0100)
src/jalview/io/FormatAdapter.java

index 0238073..6d77acc 100755 (executable)
@@ -197,6 +197,7 @@ public class FormatAdapter extends AppletFormatAdapter
     {
       // TODO consider using AlignmentView to prune to visible region
       // TODO prune sequence annotation and groups to visible region
+      // TODO: JAL-1486 - set start and end for output correctly. basically, AlignmentView.getVisibleContigs does this.
       Alignment alv = new Alignment(replaceStrings(
               alignment.getSequencesArray(), omitHidden));
       AlignmentAnnotation[] ala = alignment.getAlignmentAnnotation();